GUniFrac: Generalized UniFrac Distances and Distance-Based Multivariate Analysis of Variance

Implementation of generalized UniFrac distances for comparing microbial communities and three extensions to the PERMANOVA procedure. The three extensions are: (1) PERMANOVA using the Freedman-Lane permutation scheme; (2) PERMANOVA omnibus test using multiple matrices; and (3) Analytical approach to approximating PERMANOVA p-value.

Version: 1.2
Depends: matrixStats, Matrix, vegan, ape, parallel, stats, utils, R (≥ 3.1.0)
Suggests: ade4
Published: 2021-05-03
Author: Jun Chen
Maintainer: Jun Chen <chen.jun2 at mayo.edu>
License: GPL-3
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: GUniFrac results

Downloads:

Reference manual: GUniFrac.pdf
Package source: GUniFrac_1.2.tar.gz
Windows binaries: r-devel: GUniFrac_1.2.zip, r-release: GUniFrac_1.2.zip, r-oldrel: GUniFrac_1.2.zip
macOS binaries: r-release (arm64): GUniFrac_1.2.tgz, r-release (x86_64): GUniFrac_1.2.tgz, r-oldrel: GUniFrac_1.2.tgz
Old sources: GUniFrac archive

Reverse dependencies:

Reverse imports: animalcules, MiRKAT
Reverse suggests: microeco

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