CRAN Package Check Results for Package EHRtemporalVariability

Last updated on 2021-09-26 04:50:29 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.4 6.64 106.26 112.90 OK
r-devel-linux-x86_64-debian-gcc 1.1.4 5.72 78.22 83.94 OK
r-devel-linux-x86_64-fedora-clang 1.1.4 142.15 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.4 127.08 OK
r-devel-windows-x86_64 1.1.4 9.00 134.00 143.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.1.4 OK
r-patched-linux-x86_64 1.1.4 6.77 96.13 102.90 OK
r-patched-solaris-x86 1.1.4 180.60 WARN
r-release-linux-x86_64 1.1.4 7.33 97.05 104.38 OK
r-release-macos-arm64 1.1.4 NOTE
r-release-macos-x86_64 1.1.4 WARN
r-release-windows-ix86+x86_64 1.1.4 16.00 239.00 255.00 NOTE
r-oldrel-macos-x86_64 1.1.4 WARN
r-oldrel-windows-ix86+x86_64 1.1.4 12.00 182.00 194.00 NOTE

Check Details

Version: 1.1.4
Check: installed package size
Result: NOTE
     installed size is 11.5Mb
     sub-directories of 1Mb or more:
     doc 6.1Mb
     extdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Quitting from lines 325-330 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-release-macos-arm64

Version: 1.1.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Quitting from lines 325-330 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64