CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2021-08-04 10:52:45 CEST.

Package ERROR NOTE OK
ACNE 1 13
aroma.affymetrix 2 7 5
aroma.apd 1 13
aroma.cn 1 2 11
aroma.core 1 13
calmate 1 13
dChipIO 14
doFuture 14
future 1 13
future.apply 14
future.batchtools 1 13
future.callr 14
future.tests 12 2
globals 14
listenv 14
matrixStats 7 7
parallelly 14
profmem 14
progressr 14
PSCBS 2 12
R.cache 14
R.devices 1 13
R.filesets 1 13
R.huge 14
R.matlab 1 13
R.methodsS3 1 13
R.oo 14
R.rsp 14
R.utils 14
startup 14
TopDom 14

Package ACNE

Current CRAN status: ERROR: 1, OK: 13

Version: 0.8.1
Check: package dependencies
Result: ERROR
    Packages required but not available: 'aroma.affymetrix', 'aroma.core'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Package aroma.affymetrix

Current CRAN status: ERROR: 2, NOTE: 7, OK: 5

Version: 3.2.0
Check: installed package size
Result: NOTE
     installed size is 5.8Mb
     sub-directories of 1Mb or more:
     R 2.3Mb
     help 1.1Mb
     testScripts 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.2.0
Check: tests
Result: ERROR
     Running '001.setupExampleData,annotationData.R'
     Running '002.setupExampleData,rawData.R'
     Running 'AffymetrixCdfFile.R'
     Running 'AffymetrixCelFile.R'
     Running 'AffymetrixCelSet.R'
    Running the tests in 'tests/AffymetrixCelSet.R' failed.
    Complete output:
     > library("aroma.affymetrix")
     Loading required package: R.utils
     Loading required package: R.oo
     Loading required package: R.methodsS3
     R.methodsS3 v1.8.1 (2020-08-26 16:20:06 UTC) successfully loaded. See ?R.methodsS3 for help.
     R.oo v1.24.0 (2020-08-26 16:11:58 UTC) successfully loaded. See ?R.oo for help.
    
     Attaching package: 'R.oo'
    
     The following object is masked from 'package:R.methodsS3':
    
     throw
    
     The following objects are masked from 'package:methods':
    
     getClasses, getMethods
    
     The following objects are masked from 'package:base':
    
     attach, detach, load, save
    
     R.utils v2.10.1 (2020-08-26 22:50:31 UTC) successfully loaded. See ?R.utils for help.
    
     Attaching package: 'R.utils'
    
     The following object is masked from 'package:utils':
    
     timestamp
    
     The following objects are masked from 'package:base':
    
     cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
     warnings
    
     Loading required package: aroma.core
     Loading required package: R.filesets
     R.filesets v2.14.0 (2020-12-08 07:20:17 UTC) successfully loaded. See ?R.filesets for help.
    
     Attaching package: 'R.filesets'
    
     The following object is masked from 'package:R.utils':
    
     validate
    
     The following objects are masked from 'package:base':
    
     append, readLines
    
     Loading required package: R.devices
     R.devices v2.17.0 (2021-01-19 18:30:06 UTC) successfully loaded. See ?R.devices for help.
     aroma.core v3.2.2 (2021-01-05 05:10:12 UTC) successfully loaded. See ?aroma.core for help.
    
     Attaching package: 'aroma.core'
    
     The following objects are masked from 'package:base':
    
     .Machine, colMeans, colSums, library, require, write
    
     Loading required package: aroma.light
     aroma.light v3.22.0 (2021-05-19) successfully loaded. See ?aroma.light for help.
    
     Attaching package: 'aroma.light'
    
     The following objects are masked from 'package:aroma.affymetrix':
    
     averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
     plotXYCurve
    
     The following objects are masked from 'package:aroma.core':
    
     callNaiveGenotypes, normalizeTumorBoost
    
     Loading required package: affxparser
    
     Attaching package: 'affxparser'
    
     The following object is masked from 'package:aroma.affymetrix':
    
     writeCdf
    
     The following object is masked from 'package:R.utils':
    
     findFiles
    
     The following object is masked _by_ package:aroma.affymetrix:
    
     writeCdf
    
     The following object is masked from package:R.utils:
    
     findFiles
    
     aroma.affymetrix v3.2.0 (2019-06-23 06:00:14 UTC) successfully loaded. See ?aroma.affymetrix for help.
    
     Attaching package: 'aroma.affymetrix'
    
     The following objects are masked _by_ 'package:aroma.light':
    
     averageQuantile, normalizeQuantile, plotDensity, plotMvsA,
     plotXYCurve
    
     The following object is masked from 'package:affxparser':
    
     writeCdf
    
     >
     > ## Empty CEL set
     > ds <- AffymetrixCelSet()
     > print(ds)
     AffymetrixCelSet:
     Name: NA
     Tags:
     Path: NA
     Platform: Affymetrix
     Chip type: NA
     Number of arrays: 0
     Time period: NA
     Total file size: 0 B
     >
     > ## Extract non-existing subset on empty set
     > ds <- AffymetrixCelSet()
     > dsT <- extract(ds, "foo", onMissing="NA")
     > print(dsT)
     AffymetrixCelSet:
     Name: NA
     Tags:
     Path: NA
     Platform: Affymetrix
     Chip type: NA
     Number of arrays: 1
     Names: NA [1]
     Time period: NA -- NA
     Total file size: 0 B
     >
     > ## CEL set with non-existing CEL file
     > files <- list(AffymetrixCelFile())
     > ds <- AffymetrixCelSet(files)
     > print(ds)
     AffymetrixCelSet:
     Name: NA
     Tags:
     Path: NA
     Platform: Affymetrix
     Chip type: NA
     Number of arrays: 1
     Names: NA [1]
     Time period: NA -- NA
     Total file size: 0 B
     >
     >
     > if (setupExampleData(aroma.affymetrix, mustWork=FALSE)) {
     + # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     + # CDF file
     + # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     + cdf <- AffymetrixCdfFile$byChipType("HG-Focus")
     + print(cdf)
     +
     + # Unit names, types, ...
     + names <- getUnitNames(cdf)
     + str(names)
     +
     + units <- indexOf(cdf, names=names[42:40])
     + stopifnot(all.equal(units, 42:40))
     +
     + types <- getUnitTypes(cdf)
     + print(table(types))
     +
     + data <- readUnits(cdf, units=1:10)
     + str(data)
     +
     + data <- readDataFrame(cdf, units=1:10)
     + str(data)
     +
     + md5 <- getChecksumFile(cdf)
     + print(md5)
     +
     +
     + # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     + # CEL set / CEL file
     + # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     + cels <- AffymetrixCelSet$byName("FusionSDK_HG-Focus", cdf=cdf)
     + print(cels)
     +
     + # A single file
     + cel <- cels[[1]]
     + print(cel)
     +
     + # File checksums
     + md5s <- getChecksumFileSet(cels)
     + print(md5s)
     +
     + # File checksums
     + md5 <- getChecksumFile(cel)
     + print(md5)
     +
     + # Average CEL file
     + celR <- getAverageFile(cels)
     + print(celR)
     +
     +
     + # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     + # AromaPlatformInterface
     + # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     + platform <- getAromaPlatform(cdf)
     + print(platform)
     + stopifnot(equals(getAromaPlatform(cels), platform))
     + stopifnot(equals(getAromaPlatform(cel), platform))
     +
     + # Unit names file
     + unf <- getUnitNamesFile(cdf)
     + print(unf)
     + stopifnot(equals(getUnitNamesFile(cels), unf))
     + stopifnot(equals(getUnitNamesFile(cel), unf))
     + } # if (require("AffymetrixDataTestFiles"))
     AffymetrixCdfFile:
     Path: annotationData/chipTypes/HG-Focus
     Filename: HG-Focus.CDF
     File size: 4.06 MiB (4261873 bytes)
     Chip type: HG-Focus
     File format: v4 (binary; XDA)
     Dimension: 448x448
     Number of cells: 200704
     Number of units: 8793
     Cells per unit: 22.83
     Number of QC units: 10
     chr [1:8793] "AFFX-BioB-5_at" "AFFX-BioB-M_at" "AFFX-BioB-3_at" ...
     types
     1
     8793
     List of 10
     $ AFFX-BioB-5_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioB-5_at:List of 6
     .. .. ..$ x : int [1:40] 216 216 217 217 218 218 219 219 220 220 ...
     .. .. ..$ y : int [1:40] 264 265 264 265 264 265 264 265 264 265 ...
     .. .. ..$ pbase : chr [1:40] "A" "T" "C" "G" ...
     .. .. ..$ tbase : chr [1:40] "T" "T" "G" "G" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-BioB-M_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioB-M_at:List of 6
     .. .. ..$ x : int [1:40] 218 218 219 219 220 220 221 221 222 222 ...
     .. .. ..$ y : int [1:40] 266 267 266 267 266 267 266 267 266 267 ...
     .. .. ..$ pbase : chr [1:40] "C" "G" "T" "A" ...
     .. .. ..$ tbase : chr [1:40] "G" "G" "A" "A" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-BioB-3_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioB-3_at:List of 6
     .. .. ..$ x : int [1:40] 220 220 221 221 222 222 223 223 224 224 ...
     .. .. ..$ y : int [1:40] 268 269 268 269 268 269 268 269 268 269 ...
     .. .. ..$ pbase : chr [1:40] "C" "G" "C" "G" ...
     .. .. ..$ tbase : chr [1:40] "G" "G" "G" "G" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-BioC-5_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioC-5_at:List of 6
     .. .. ..$ x : int [1:40] 222 222 223 223 224 224 225 225 226 226 ...
     .. .. ..$ y : int [1:40] 270 271 270 271 270 271 270 271 270 271 ...
     .. .. ..$ pbase : chr [1:40] "G" "C" "C" "G" ...
     .. .. ..$ tbase : chr [1:40] "C" "C" "G" "G" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-BioC-3_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioC-3_at:List of 6
     .. .. ..$ x : int [1:40] 224 224 225 225 226 226 227 227 228 228 ...
     .. .. ..$ y : int [1:40] 272 273 272 273 272 273 272 273 272 273 ...
     .. .. ..$ pbase : chr [1:40] "A" "T" "T" "A" ...
     .. .. ..$ tbase : chr [1:40] "T" "T" "A" "A" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-BioDn-5_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioDn-5_at:List of 6
     .. .. ..$ x : int [1:40] 226 226 227 227 228 228 229 229 230 230 ...
     .. .. ..$ y : int [1:40] 274 275 274 275 274 275 274 275 274 275 ...
     .. .. ..$ pbase : chr [1:40] "G" "C" "A" "T" ...
     .. .. ..$ tbase : chr [1:40] "C" "C" "T" "T" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-BioDn-3_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-BioDn-3_at:List of 6
     .. .. ..$ x : int [1:40] 228 228 229 229 230 230 231 231 232 232 ...
     .. .. ..$ y : int [1:40] 276 277 276 277 276 277 276 277 276 277 ...
     .. .. ..$ pbase : chr [1:40] "T" "A" "T" "A" ...
     .. .. ..$ tbase : chr [1:40] "A" "A" "A" "A" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-CreX-5_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-CreX-5_at:List of 6
     .. .. ..$ x : int [1:40] 230 230 231 231 232 232 233 233 216 216 ...
     .. .. ..$ y : int [1:40] 278 279 278 279 278 279 278 279 280 281 ...
     .. .. ..$ pbase : chr [1:40] "T" "A" "C" "G" ...
     .. .. ..$ tbase : chr [1:40] "A" "A" "G" "G" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-CreX-3_at :List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-CreX-3_at:List of 6
     .. .. ..$ x : int [1:40] 232 232 233 233 216 216 217 217 218 218 ...
     .. .. ..$ y : int [1:40] 280 281 280 281 282 283 282 283 282 283 ...
     .. .. ..$ pbase : chr [1:40] "C" "G" "A" "T" ...
     .. .. ..$ tbase : chr [1:40] "G" "G" "T" "T" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     $ AFFX-HUMISGF3A/M97935_5_at:List of 3
     ..$ type : int 1
     ..$ direction: int 2
     ..$ groups :List of 1
     .. ..$ AFFX-HUMISGF3A/M97935_5_at:List of 6
     .. .. ..$ x : int [1:40] 443 443 249 249 390 390 266 266 416 416 ...
     .. .. ..$ y : int [1:40] 331 332 123 124 335 336 285 286 331 332 ...
     .. .. ..$ pbase : chr [1:40] "C" "G" "G" "C" ...
     .. .. ..$ tbase : chr [1:40] "G" "G" "C" "C" ...
     .. .. ..$ expos : int [1:40] 0 0 1 1 2 2 3 3 4 4 ...
     .. .. ..$ direction: int 2
     'data.frame': 400 obs. of 16 variables:
     $ unit : int 1 1 1 1 1 1 1 1 1 1 ...
     $ unitName : chr "AFFX-BioB-5_at" "AFFX-BioB-5_at" "AFFX-BioB-5_at" "AFFX-BioB-5_at" ...
     $ unitType : chr "expression" "expression" "expression" "expression" ...
     $ unitDirection : chr "antisense" "antisense" "antisense" "antisense" ...
     $ unitNbrOfAtoms : int 20 20 20 20 20 20 20 20 20 20 ...
     $ group : int 1 1 1 1 1 1 1 1 1 1 ...
     $ groupName : chr "AFFX-BioB-5_at" "AFFX-BioB-5_at" "AFFX-BioB-5_at" "AFFX-BioB-5_at" ...
     $ groupDirection : chr "antisense" "antisense" "antisense" "antisense" ...
     $ groupNbrOfAtoms: int 20 20 20 20 20 20 20 20 20 20 ...
     $ cell : int 118489 118937 118490 118938 118491 118939 118492 118940 118493 118941 ...
     $ x : int 216 216 217 217 218 218 219 219 220 220 ...
     $ y : int 264 265 264 265 264 265 264 265 264 265 ...
     $ pbase : chr "A" "T" "C" "G" ...
     $ tbase : chr "T" "T" "G" "G" ...
     $ indexPos : int 0 0 1 1 2 2 3 3 4 4 ...
     $ atom : int 0 0 1 1 2 2 3 3 4 4 ...
     ChecksumFile:
     Name: HG-Focus.CDF
     Tags:
     Full name: HG-Focus.CDF
     Pathname: annotationData/chipTypes/HG-Focus/HG-Focus.CDF.md5
     File size: 32 B (32 bytes)
     Checksum on record: 307006493ef52faf137da0bd84c59ca8
     AffymetrixCelSet:
     Name: HG-Focus
     Tags:
     Path: ../../../../lib/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin
     Platform: Affymetrix
     Chip type: HG-Focus
     Number of arrays: 2
     Names: HG-Focus-1-121502, HG-Focus-2-121502 [2]
     Time period: 2002-05-15 10:59:33 -- 2002-05-15 11:07:10
     Total file size: 3.84 MiB
     AffymetrixCelFile:
     Name: HG-Focus-1-121502
     Tags:
     Full name: HG-Focus-1-121502
     Pathname: ../../../../lib/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL
     File size: 1.92 MiB (2012775 bytes)
     File format: v1 (binary; CC)
     Platform: Affymetrix
     Chip type: HG-Focus
     Timestamp: 2002-05-15 11:07:10
     ChecksumFileSet:
     Name: 2.Calvin
     Tags:
     Full name: 2.Calvin
     Number of files: 2
     Names: HG-Focus-1-121502.CEL, HG-Focus-2-121502.CEL [2]
     Path (to the first file): ../../../../lib/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin
     Total file size: 64 B (64 bytes)
     ChecksumFile:
     Name: HG-Focus-1-121502.CEL
     Tags:
     Full name: HG-Focus-1-121502.CEL
     Pathname: ../../../../lib/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/HG-Focus-1-121502.CEL.md5
     File size: 32 B (32 bytes)
     Checksum on record: eb680c1b324e74b649e8b7fc643ee0c5
     Error in file(filename, open = "w+b") : cannot open the connection
     Calls: getAverageFile ... createFrom.AffymetrixCelFile -> .createCel -> <Anonymous> -> file
     In addition: Warning messages:
     1: In readCdfDataFrame(filename = "annotationData/chipTypes/HG-Focus/HG-Focus.CDF", :
     Some of the fields were not read: expos
     2: In file(filename, open = "w+b") :
     cannot open file '../../../../lib/AffymetrixDataTestFiles/rawData/FusionSDK_HG-Focus/HG-Focus/2.Calvin/.average-intensities-median-mad,b6c18433fdbd8c5edcea9dc2fa49c6aa.CEL.tmp': No such file or directory
     Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 3.2.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘aroma.core’
    
    Packages suggested but not available for checking:
     'affxparser', 'affyPLM', 'aroma.light', 'gcrma', 'oligo',
     'oligoClasses', 'pdInfoBuilder', 'AffymetrixDataTestFiles'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Version: 3.2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'pdInfoBuilder', 'AffymetrixDataTestFiles'
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Package aroma.apd

Current CRAN status: NOTE: 1, OK: 13

Version: 0.6.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘affxparser’
Flavor: r-release-macos-arm64

Version: 0.6.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘affxparser’
Flavor: r-release-macos-arm64

Package aroma.cn

Current CRAN status: ERROR: 1, NOTE: 2, OK: 11

Version: 1.6.1
Check: package dependencies
Result: ERROR
    Packages required but not available: 'aroma.core', 'PSCBS'
    
    Packages suggested but not available for checking: 'aroma.light', 'GLAD'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Version: 1.6.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GLAD’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Package aroma.core

Current CRAN status: ERROR: 1, NOTE: 13

Version: 3.2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.2.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘PSCBS’
    
    Packages suggested but not available for checking:
     'EBImage', 'aroma.light', 'GLAD', 'sfit', 'expectile', 'HaarSeg',
     'mpcbs'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Version: 3.2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 3.2.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘GLAD’
Flavor: r-oldrel-macos-x86_64

Package calmate

Current CRAN status: ERROR: 1, OK: 13

Version: 0.12.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘aroma.core’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Package dChipIO

Current CRAN status: OK: 14

Package doFuture

Current CRAN status: OK: 14

Package future

Current CRAN status: ERROR: 1, OK: 13

Additional issues

M1mac

Version: 1.21.0
Check: tests
Result: ERROR
     Running ‘000.sessionDetails.R’ [0s/0s]
     Running ‘ClusterRegistry.R’ [1s/2s]
     Running ‘Future-class.R’ [1s/1s]
     Running ‘FutureError.R’ [0s/0s]
     Running ‘FutureGlobals.R’ [0s/0s]
     Running ‘FutureRegistry.R’ [0s/1s]
     Running ‘backtrace.R’ [1s/2s]
     Running ‘cluster-missing-future-pkg.R’ [0s/1s]
     Running ‘cluster.R’ [1s/7s]
    Running the tests in ‘tests/cluster.R’ failed.
    Last 13 lines of output:
     > ## Sanity checks
     > pid2 <- Sys.getpid()
     > message("Main PID (original): ", pid)
     Main PID (original): 180
     > message("Main PID: ", pid2)
     Main PID: 180
     > stopifnot(pid2 == pid)
     >
     > source("incl/end.R")
     >
     > ## Sanity checks
     > pid2 <- Sys.getpid()
     > message("Main PID (original): ", pid)
     Error in message("Main PID (original): ", pid) : object 'pid' not found
     Execution halted
Flavor: r-release-macos-arm64

Package future.apply

Current CRAN status: OK: 14

Package future.batchtools

Current CRAN status: NOTE: 1, OK: 13

Version: 0.10.0
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘globals’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package future.callr

Current CRAN status: OK: 14

Package future.tests

Current CRAN status: NOTE: 12, OK: 2

Version: 0.2.1
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Package globals

Current CRAN status: OK: 14

Package listenv

Current CRAN status: OK: 14

Package matrixStats

Current CRAN status: NOTE: 7, OK: 7

Version: 0.60.0
Check: installed package size
Result: NOTE
     installed size is 10.6Mb
     sub-directories of 1Mb or more:
     libs 9.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.59.0
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     libs 4.6Mb
Flavor: r-release-windows-ix86+x86_64

Package parallelly

Current CRAN status: OK: 14

Package profmem

Current CRAN status: OK: 14

Package progressr

Current CRAN status: OK: 14

Package PSCBS

Current CRAN status: ERROR: 2, OK: 12

Version: 0.65.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘aroma.light’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-macos-arm64

Version: 0.65.0
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘CBS.tex.rsp’
     ...
    
    > t0 <- Sys.time()
    
    > R.utils::use("R.utils")
    
    > R.rsp <- R.oo::Package("R.rsp")
    
     When sourcing ‘CBS.R’:
    Error: Package is not installed: R.rsp
    Execution halted
    
     ‘CBS.tex.rsp’... failed
     ‘PairedPSCBS.tex.rsp’... [25s/31s] OK
Flavor: r-release-macos-x86_64

Package R.cache

Current CRAN status: OK: 14

Package R.devices

Current CRAN status: ERROR: 1, OK: 13

Version: 2.17.0
Check: tests
Result: ERROR
     Running ‘DevEvalFileProduct.R’
     Running ‘DevEvalProduct.R’
     Running ‘capabilitiesX11.R’
     Running ‘capturePlot.R’
     Running ‘dataURI.R’
     Running ‘devAll.R’
     Running ‘devDump.R’
     Running ‘devEqualTypes.R’
     Running ‘devEval,error.R’
     Running ‘devEval.R’ [5s/21s]
     Running ‘devIsInteractive.R’
     Running ‘devIsOpen.R’
     Running ‘devList.R’
     Running ‘devListIndexOf.R’
     Running ‘devNew.R’
     Running ‘devOptions.R’
     Running ‘devSet.R’
     Running ‘devTypeName.R’
     Running ‘favicon.R’
     Running ‘toNNN.R’
     Running ‘withPar.R’
    Running the tests in ‘tests/devEval.R’ failed.
    Complete output:
     > message("*** devEval() ...")
     *** devEval() ...
     >
     > library("R.devices")
     R.devices v2.17.0 (2021-01-19 18:30:06 UTC) successfully loaded. See ?R.devices for help.
     > library("R.utils")
     Loading required package: R.oo
     Loading required package: R.methodsS3
     R.methodsS3 v1.8.1 (2020-08-26 16:20:06 UTC) successfully loaded. See ?R.methodsS3 for help.
     R.oo v1.24.0 (2020-08-26 16:11:58 UTC) successfully loaded. See ?R.oo for help.
    
     Attaching package: 'R.oo'
    
     The following object is masked from 'package:R.methodsS3':
    
     throw
    
     The following objects are masked from 'package:methods':
    
     getClasses, getMethods
    
     The following objects are masked from 'package:base':
    
     attach, detach, load, save
    
     R.utils v2.10.1 (2020-08-26 22:50:31 UTC) successfully loaded. See ?R.utils for help.
    
     Attaching package: 'R.utils'
    
     The following object is masked from 'package:utils':
    
     timestamp
    
     The following objects are masked from 'package:base':
    
     cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
     warnings
    
     > graphics.off()
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > # Various types of single and multiple device outputs
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > message("*** devEval() - single and multiple device outputs ...")
     *** devEval() - single and multiple device outputs ...
     >
     > types <- list(
     + character(0L),
     + "{png}",
     + "{jpg}",
     + "nulldev",
     + c("{png}", "{png}", "{jpeg}"),
     + "{png},nulldev,pdf"
     + )
     >
     > for (type in types) {
     + cat("Device types: ", paste(sQuote(type), collapse=", "), "\n", sep="")
     + devList0 <- devList()
     + res <- devEval(type, name="multi", aspectRatio=2/3, {
     + plot(1:10)
     + })
     + print(res)
     + stopifnot(length(res) == length(unlist(strsplit(type, split=","))))
     + stopifnot(all.equal(devList(), devList0))
     + }
     Device types:
     character(0)
     Device types: '{png}'
     [1] "figures/multi.png"
     Device types: '{jpg}'
     [1] "figures/multi.jpg"
     Device types: 'nulldev'
     [1] "/dev/null"
     Device types: '{png}', '{png}', '{jpeg}'
     $png
     [1] "figures/multi.png"
    
     $png
     [1] "figures/multi.png"
    
     $jpeg
     [1] "figures/multi.jpg"
    
     Device types: '{png},nulldev,pdf'
     $png
     [1] "figures/multi.png"
    
     $nulldev
     [1] "/dev/null"
    
     $pdf
     [1] "figures/multi.pdf"
    
     >
     > # Sanity checks
     > print(devList())
     named integer(0)
     > stopifnot(length(devList()) == 0L)
     >
     > message("*** devEval() - single and multiple device outputs ... DONE")
     *** devEval() - single and multiple device outputs ... DONE
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > # With 'initially' and 'finally' expression
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > message("*** devEval() - initially and finally ...")
     *** devEval() - initially and finally ...
     >
     > devList0 <- devList()
     > devEval(c("{png}", "{jpg}"), name="count", {
     + plot(1:10)
     + count <- count + 1L
     + }, initially = {
     + # Emulate an overhead
     + cat("Initiate...")
     + count <- 0L
     + Sys.sleep(1)
     + cat("done\n")
     + }, finally = {
     + cat("Number of image files created: ", count, "\n", sep="")
     + })
     Initiate...done
     Number of image files created: 2
     $png
     [1] "figures/count.png"
    
     $jpeg
     [1] "figures/count.jpg"
    
     > stopifnot(all.equal(devList(), devList0))
     >
     > # Sanity checks
     > print(devList())
     named integer(0)
     > stopifnot(length(devList()) == 0L)
     >
     > message("*** devEval() - initially and finally ... DONE")
     *** devEval() - initially and finally ... DONE
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > # Try several devices until first successful device is found
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > message("*** devEval() - first successful device ...")
     *** devEval() - first successful device ...
     >
     > types <- list(
     + "png|jpg|pdf", # PNG, JPG, or PDF
     + "dummy|png|jpg|pdf", # "Non-existing", PNG, JPG, or PDF
     + "quartz|x11|windows", # Any interactive device (depending on OS)
     + c("{png}|jpg", "x11|windows"), # PNG or JPG and then x11 or windows
     + "eps|postscript|pdf", # EPS, Postscript or PDF
     + "jpeg2|jpeg", # JPEG via bitmap() or via jpeg()
     + "{png},jpg|x11|windows", # == c("{png}", "jpg|x11|windows")
     + "nulldev|jpeg", # NULL devices, otherwise jpeg
     + "{png}" # Any PNG device
     + )
     >
     > if (!capabilitiesX11()) {
     + message("Skipping test for X11")
     + types <- lapply(types, FUN=function(x) gsub("x11|", "", x, fixed=TRUE))
     + }
     >
     > devList0 <- devList()
     >
     > for (type in types) {
     + printf("Any of %s\n", paste(sQuote(type), collapse=" + "))
     +
     + # Use try-catch in case not supported on some test systems
     + tryCatch({
     + res <- devEval(type, name="any", aspectRatio=2/3, scale=1.2, {
     + plot(100:1)
     + })
     + printf("Result: %s (%s)\n\n", sQuote(res), attr(res, "type"))
     +
     + if (length(devList()) > 0) devOff()
     + }, error = function(ex) {
     + printf("Failed: %s\n\n", sQuote(ex$message))
     + })
     + } # for (type ...)
     Any of 'png|jpg|pdf'
     Result: 'figures/any.png' (png)
    
     Any of 'dummy|png|jpg|pdf'
     Result: 'figures/any.png' (png)
    
     Any of 'quartz|x11|windows'
     Failed: 'Failed to open graphics device: quartz'
    
     Any of '{png}|jpg' + 'x11|windows'
     Any of 'eps|postscript|pdf'
     Result: 'figures/any.eps' (eps)
    
     Any of 'jpeg2|jpeg'
     Result: 'figures/any.jpg' (jpeg2)
    
     Any of '{png},jpg|x11|windows'
    
     *** caught segfault ***
     address f7fc6018, cause 'memory not mapped'
    
     Traceback:
     1: .External2(C_X11, d$display, d$width, d$height, d$pointsize, d$gamma, d$colortype, d$maxcubesize, d$bg, d$canvas, d$fonts, NA_integer_, d$xpos, d$ypos, d$title, type, antialias, d$family, optionSymbolFont(d$symbolfamily))
     2: (function (display = "", width, height, pointsize, gamma, bg, canvas, fonts, family, xpos, ypos, title, type, antialias, symbolfamily, ...) { if (display != "XImage") { check <- Sys.getenv("_R_CHECK_SCREEN_DEVICE_", "") msg <- "screen devices should not be used in examples etc" if (identical(check, "stop")) stop(msg, domain = NA) else if (identical(check, "warn")) warning(msg, immediate. = TRUE, noBreaks. = TRUE, domain = NA) } if (display == "" && .Platform$GUI == "AQUA" && is.na(Sys.getenv("DISPLAY", NA))) Sys.setenv(DISPLAY = ":0") new <- list() if (!missing(display)) new$display <- display if (!missing(width)) new$width <- width if (!missing(height)) new$height <- height if (!missing(gamma)) new$gamma <- gamma if (!missing(pointsize)) new$pointsize <- pointsize if (!missing(bg)) new$bg <- bg if (!missing(canvas)) new$canvas <- canvas if (!missing(xpos)) new$xpos <- xpos if (!missing(ypos)) new$ypos <- ypos if (!missing(title)) new$title <- title if (!checkIntFormat(new$title)) stop("invalid 'title'") if (!missing(type)) { new$type <- match.arg(type, c("Xlib", "cairo", "nbcairo", "dbcairo")) if (!capabilities("cairo") && type != "Xlib") warning("cairo-based types are not supported on this build - using \"Xlib\"") } if (!missing(family)) new$family <- family if (!missing(fonts)) new$fonts <- fonts if (!missing(antialias) && type != "Xlib") new$antialias <- match.arg(antialias, aa.cairo) if (!missing(symbolfamily)) new$symbolfamily <- symbolfamily d <- check.options(new, name.opt = ".X11.Options", envir = .X11env) if (d$type == "Xlib" && !missing(family)) { fns <- X11Fonts() if (!family %in% names(fns)) stop("unknown family for X11(type = \"XLib\")") d$fonts[1] <- fns[[family]] } type <- if (capabilities("cairo")) switch(d$type, cairo = 1L, nbcairo = 2L, dbcairo = 3L, 0L) else 0L if (display == "XImage") type <- 0L antialias <- match(d$antialias, aa.cairo) if (grepl("darwin", R.version$os)) check_for_XQuartz() .External2(C_X11, d$display, d$width, d$height, d$pointsize, d$gamma, d$colortype, d$maxcubesize, d$bg, d$canvas, d$fonts, NA_integer_, d$xpos, d$ypos, d$title, type, antialias, d$family, optionSymbolFont(d$symbolfamily)) invisible()})()
     3: do.call(typeT, args = args)
     4: devNew(type, which = fullname, ..., .allowUnknownArgs = .allowUnknownArgs)
     5: devEval(type = type, expr = expr, initially = NULL, finally = NULL, envir = envir, name = nameOrg, tags = tags, sep = sep, ..., ext = ext, filename = filename, path = path, field = field, onIncomplete = onIncomplete, force = force, .exprAsIs = TRUE, .allowUnknownArgs = TRUE)
     6: FUN(X[[i]], ...)
     7: lapply(types, FUN = function(type) { devEval(type = type, expr = expr, initially = NULL, finally = NULL, envir = envir, name = nameOrg, tags = tags, sep = sep, ..., ext = ext, filename = filename, path = path, field = field, onIncomplete = onIncomplete, force = force, .exprAsIs = TRUE, .allowUnknownArgs = TRUE)})
     8: devEval(type, name = "any", aspectRatio = 2/3, scale = 1.2, { plot(100:1)})
     9: doTryCatch(return(expr), name, parentenv, handler)
     10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     11: tryCatchList(expr, classes, parentenv, handlers)
     12: tryCatch({ res <- devEval(type, name = "any", aspectRatio = 2/3, scale = 1.2, { plot(100:1) }) printf("Result: %s (%s)\n\n", sQuote(res), attr(res, "type")) if (length(devList()) > 0) devOff()}, error = function(ex) { printf("Failed: %s\n\n", sQuote(ex$message))})
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Package R.filesets

Current CRAN status: ERROR: 1, OK: 13

Version: 2.14.0
Check: tests
Result: ERROR
     Running ‘ChecksumFile.R’ [2s/3s]
     Running ‘GenericDataFile.R’ [2s/4s]
    Running the tests in ‘tests/GenericDataFile.R’ failed.
    Last 13 lines of output:
     + stopifnot(!isFile(dfLC))
     + stopifnot(isFile(dfL))
     + stopifnot(isFile(df))
     +
     + # Cleanup
     + file.remove(getPathname(dfL))
     + } # if (.Platform$OS.type == "windows")
     GenericDataFile:
     Name: 1.2(a)
     Tags:
     Full name: 1.2(a)
     Pathname: /Volumes/Temp/tmp/RtmpIGOwCA/1.2(a).txt
     File size: 153 B (153 bytes)
     Error: getChecksum(dfLC) == getChecksum(df) is not TRUE
     Execution halted
Flavor: r-release-macos-x86_64

Package R.huge

Current CRAN status: OK: 14

Package R.matlab

Current CRAN status: ERROR: 1, OK: 13

Version: 3.6.2
Check: tests
Result: ERROR
     Running ‘Matlab,options.R’
     Running ‘Matlab.R’
     Running ‘readMat,noattach.R’
     Running ‘readMat.R’
     Running ‘startup.R’
     Running ‘writeMat.R’ [17s/19s]
    Running the tests in ‘tests/readMat.R’ failed.
    Complete output:
     > library("R.matlab")
     R.matlab v3.6.2 (2018-09-26) successfully loaded. See ?R.matlab for help.
    
     Attaching package: 'R.matlab'
    
     The following objects are masked from 'package:base':
    
     getOption, isOpen
    
     > library("methods")
     >
     > path <- system.file("mat-files", package = "R.matlab")
     >
     >
     > equals <- function(target, current, ..., check.attributes = FALSE,
     + assert = TRUE) {
     + ## AD HOC: 'SparseM' matrices gives an error on
     + ## as.matrix() if covr::package_coverage().
     + if ("covr" %in% loadedNamespaces()) {
     + for (obj in list(target, current))
     + if (inherits(obj, c("matrix.coo", "matrix.csc"))) return(TRUE)
     + }
     + target <- as.matrix(target)
     + current <- as.matrix(current)
     + eq <- all.equal(target = target, current = current,
     + check.attributes = check.attributes, ...)
     + if (!isTRUE(eq)) {
     + print(eq)
     + str(list(target, current))
     + if (assert) {
     + stop("Detected differences between matrices.")
     + }
     + }
     + eq
     + }
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > # Reading all example files
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > for (version in 4:5) {
     + cat("Loading all MAT v", version, " example files in ",
     + path, "...\n", sep = "")
     +
     + pattern <- sprintf("-v%d[.]mat$", version)
     + pathnames <- list.files(pattern = pattern, path = path, full.names = TRUE)
     +
     + for (pathname in pathnames) {
     + cat("Reading MAT file: ", basename(pathname), "\n", sep = "")
     + tryCatch({
     + mat <- readMat(pathname)
     + print(mat)
     + }, error = function(ex) {
     + print(ex)
     + message(pathname)
     + })
     + }
     + }
     Loading all MAT v4 example files in /home/ripley/R/Lib32/R.matlab/mat-files...
     Reading MAT file: Matrix-BigEndian-v4.mat
     $x
     [,1]
     [1,] 0.05322716
     [2,] 0.74638659
     [3,] 0.26134080
     [4,] 0.16421010
     [5,] 0.63433397
    
     attr(,"header")
     attr(,"header")$version
     [1] "4"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: Matrix-v4.mat
     $x
     [,1]
     [1,] -1.49775124
     [2,] -1.10704029
     [3,] 1.18735480
     [4,] 0.21151473
     [5,] -1.21211421
     [6,] -0.03170872
     [7,] -0.39826268
     [8,] -1.51964319
     [9,] 0.48633114
     [10,] 0.23586598
    
     attr(,"header")
     attr(,"header")$version
     [1] "4"
    
     attr(,"header")$endian
     [1] "little"
    
     Reading MAT file: SparseLogicalDouble-v4.mat
     $L
     10 x 5 sparse Matrix of class "dgCMatrix"
    
     [1,] . 2.130317e-314 0.000000e+00 . .
     [2,] . . . 1.379622e-306 .
     [3,] . . 1.630417e-322 . .
     [4,] . . . . 2.121996e-314
     [5,] . 0.000000e+00 8.518597e-316 3.756030e-317 8.519104e-316
     [6,] . 0.000000e+00 . . .
     [7,] 7.748604e-304 . . 1.630417e-322 .
     [8,] . . . 2.348641e-310 .
     [9,] . . . . .
     [10,] . . . . 0.000000e+00
    
     $D
     10 x 5 sparse Matrix of class "dgCMatrix"
    
     [1,] . 1 1 . .
     [2,] . . . 1 .
     [3,] . . 1 . .
     [4,] . . . . 1
     [5,] . 1 1 1 1
     [6,] . 1 . . .
     [7,] 1 . . 1 .
     [8,] . . . 1 .
     [9,] . . . . .
     [10,] . . . . 0
    
     attr(,"header")
     attr(,"header")$version
     [1] "4"
    
     attr(,"header")$endian
     [1] "little"
    
     Reading MAT file: SparseMatrix-v4.mat
     $S
     20 x 20 sparse Matrix of class "dgCMatrix"
    
     [1,] 1 . . . . . . . . . . . . . . . . . . .
     [2,] . 1 . . . . . . . . . . . . . . . . . .
     [3,] . . 1 . . . . . . . . . . . . . . . . .
     [4,] . . . 1 . . . . . . . . . . . . . . . .
     [5,] . . . . 1 . . . . . . . . . . . . . . .
     [6,] . . . . . 1 . . . . . . . . . . . . . .
     [7,] . . . . . . 1 . . . . . . . . . . . . .
     [8,] . . . . . . . 1 . . . . . . . . . . . .
     [9,] . . . . . . . . 1 . . . . . . . . . . .
     [10,] . . . . . . . . . 1 . . . . . . . . . .
     [11,] . . . . . . . . . . 1 . . . . . . . . .
     [12,] . . . . . . . . . . . 1 . . . . . . . .
     [13,] . . . . . . . . . . . . 1 . . . . . . .
     [14,] . . . . . . . . . . . . . 1 . . . . . .
     [15,] . . . . . . . . . . . . . . 1 . . . . .
     [16,] . . . . . . . . . . . . . . . 1 . . . .
     [17,] . . . . . . . . . . . . . . . . 1 . . .
     [18,] . . . . . . . . . . . . . . . . . 1 . .
     [19,] . . . . . . . . . . . . . . . . . . 1 .
     [20,] . . . . . . . . . . . . . . . . . . . 0
    
     attr(,"header")
     attr(,"header")$version
     [1] "4"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: SparseMatrix3-v4.mat
     $sparseM
     8 x 5 sparse Matrix of class "dgCMatrix"
    
     [1,] 0.95012929 0.8214072 0.935469699 0.13889088 0.4450964
     [2,] 0.23113851 0.4447034 0.916904440 0.20276522 0.9318146
     [3,] 0.60684258 0.6154323 0.410270207 0.19872174 0.4659943
     [4,] 0.48598247 0.7919370 0.893649531 0.60379248 0.4186495
     [5,] 0.89129897 0.9218130 0.057891305 0.27218792 0.8462214
     [6,] 0.76209683 0.7382072 0.352868132 0.19881427 0.5251525
     [7,] 0.45646767 0.1762661 0.813166497 0.01527393 0.2026474
     [8,] 0.01850364 0.4057062 0.009861301 0.74678568 0.6721375
    
     attr(,"header")
     attr(,"header")$version
     [1] "4"
    
     attr(,"header")$endian
     [1] "big"
    
     Loading all MAT v5 example files in /home/ripley/R/Lib32/R.matlab/mat-files...
     Reading MAT file: Matrix-LittleEndian-v5.mat
     $x
     [,1]
     [1,] 0.05322716
     [2,] 0.74638659
     [3,] 0.26134080
     [4,] 0.16421010
     [5,] 0.63433397
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: SOL2, Created on: Tue Feb 10 14:37:03 2004 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: Matrix-v5.mat
     $X
     , , 1
    
     [,1]
     x numeric,6
     y list,2
     z numeric,196
    
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: PCWIN, Created on: Tue Aug 27 01:25:36 2002 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "little"
    
     Reading MAT file: SparseLogicalDouble-v5.mat
     $L
     10 x 5 sparse Matrix of class "lgCMatrix"
    
     [1,] . | | . .
     [2,] . . . | .
     [3,] . . | . .
     [4,] . . . . |
     [5,] . | | | |
     [6,] . | . . .
     [7,] | . . | .
     [8,] . . . | .
     [9,] . . . . .
     [10,] . . . . .
    
     $D
     10 x 5 sparse Matrix of class "dgCMatrix"
    
     [1,] . 1 1 . .
     [2,] . . . 1 .
     [3,] . . 1 . .
     [4,] . . . . 1
     [5,] . 1 1 1 1
     [6,] . 1 . . .
     [7,] 1 . . 1 .
     [8,] . . . 1 .
     [9,] . . . . .
     [10,] . . . . .
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: GLNXA64, Created on: Thu Jun 7 15:36:19 2012 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "little"
    
     Reading MAT file: SparseMatrix-v5.mat
     $S
     20 x 20 sparse Matrix of class "dgCMatrix"
    
     [1,] 1 . . . . . . . . . . . . . . . . . . .
     [2,] . 1 . . . . . . . . . . . . . . . . . .
     [3,] . . 1 . . . . . . . . . . . . . . . . .
     [4,] . . . 1 . . . . . . . . . . . . . . . .
     [5,] . . . . 1 . . . . . . . . . . . . . . .
     [6,] . . . . . 1 . . . . . . . . . . . . . .
     [7,] . . . . . . 1 . . . . . . . . . . . . .
     [8,] . . . . . . . 1 . . . . . . . . . . . .
     [9,] . . . . . . . . 1 . . . . . . . . . . .
     [10,] . . . . . . . . . 1 . . . . . . . . . .
     [11,] . . . . . . . . . . 1 . . . . . . . . .
     [12,] . . . . . . . . . . . 1 . . . . . . . .
     [13,] . . . . . . . . . . . . 1 . . . . . . .
     [14,] . . . . . . . . . . . . . 1 . . . . . .
     [15,] . . . . . . . . . . . . . . 1 . . . . .
     [16,] . . . . . . . . . . . . . . . 1 . . . .
     [17,] . . . . . . . . . . . . . . . . 1 . . .
     [18,] . . . . . . . . . . . . . . . . . 1 . .
     [19,] . . . . . . . . . . . . . . . . . . 1 .
     [20,] . . . . . . . . . . . . . . . . . . . .
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: SOL2, Created on: Tue Feb 10 16:40:52 2004 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: SparseMatrix2-v5.mat
     $sparseM
     20 x 18 sparse Matrix of class "dgCMatrix"
    
     [1,] 1 . . . . . . . . . . . . . . . . .
     [2,] . 1 3 4 5 . . . . . . . . . . . . .
     [3,] . . 1 . . . . . . . . . . . . . . .
     [4,] . . . 1 . . . . . . . . . . . . . .
     [5,] . . . . 1 . . . . . . . . . . . . .
     [6,] . . . . . 1 . . . . . . . . . . . .
     [7,] . . . . . . 1 . . . . . . . . . . .
     [8,] . . . . . . . 1 . . . . . . . . . .
     [9,] . . . . . . . . 1 . . . . . . . . .
     [10,] . . . . . . . . . 1 . . . . . . . .
     [11,] . . . . . . . . . . 1 . . . . . . .
     [12,] . . . . . . . . . . . 1 . . . . . .
     [13,] . . . . . . . . . . . . 1 . . . . .
     [14,] . . . . . . . . . . . . . 1 . . . .
     [15,] . . . . . . . . . . . . . . 1 . . .
     [16,] . . . . . . . . . . . . . . . 1 . .
     [17,] . . . . . . . . . . . . . . . . 1 .
     [18,] . . . . . . . . . . . . . . . . . 1
     [19,] . . . . . . . . . . . . . . . . . .
     [20,] . . . . . . . . . . . . . . . . . .
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: SOL2, Created on: Tue Feb 10 19:00:09 2004 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: SparseMatrix3-v5.mat
     $sparseM
     8 x 5 sparse Matrix of class "dgCMatrix"
    
     [1,] 0.95012929 0.8214072 0.935469699 0.13889088 0.4450964
     [2,] 0.23113851 0.4447034 0.916904440 0.20276522 0.9318146
     [3,] 0.60684258 0.6154323 0.410270207 0.19872174 0.4659943
     [4,] 0.48598247 0.7919370 0.893649531 0.60379248 0.4186495
     [5,] 0.89129897 0.9218130 0.057891305 0.27218792 0.8462214
     [6,] 0.76209683 0.7382072 0.352868132 0.19881427 0.5251525
     [7,] 0.45646767 0.1762661 0.813166497 0.01527393 0.2026474
     [8,] 0.01850364 0.4057062 0.009861301 0.74678568 0.6721375
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: SOL2, Created on: Tue Feb 10 19:37:28 2004 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: SparseMatrixPage20-v5.mat
     $S
     3 x 3 sparse Matrix of class "dgCMatrix"
    
     [1,] 1.5 . .
     [2,] . 2.5 .
     [3,] . . 3.5
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: SOL2, Created on: Tue Feb 10 18:12:51 2004 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "big"
    
     Reading MAT file: aFunction,arraytype=16-v5.mat
     $f
     [1] 06 00 00 00 08 00 00 00 02 00 00 00 00 00 00 00 05 00 00 00 08 00 00 00 01
     [26] 00 00 00 01 00 00 00 01 00 00 00 00 00 00 00 05 00 04 00 10 00 00 00 01 00
     [51] 00 00 40 00 00 00 6d 61 74 6c 61 62 72 6f 6f 74 00 00 00 00 00 00 73 65 70
     [76] 61 72 61 74 6f 72 00 00 00 00 00 00 00 73 65 6e 74 69 6e 65 6c 00 00 00 00
     [101] 00 00 00 00 66 75 6e 63 74 69 6f 6e 5f 68 61 6e 64 6c 65 00 0e 00 00 00 48
     [126] 00 00 00 06 00 00 00 08 00 00 00 04 00 00 00 00 00 00 00 05 00 00 00 08 00
     [151] 00 00 01 00 00 00 18 00 00 00 01 00 00 00 00 00 00 00 10 00 00 00 18 00 00
     [176] 00 2f 6f 70 74 2f 6c 6f 63 61 6c 2f 4d 41 54 4c 41 42 2f 52 32 30 31 32 61
     [201] 0e 00 00 00 30 00 00 00 06 00 00 00 08 00 00 00 04 00 00 00 00 00 00 00 05
     [226] 00 00 00 08 00 00 00 01 00 00 00 01 00 00 00 01 00 00 00 00 00 00 00 10 00
     [251] 01 00 2f 00 00 00 0e 00 00 00 30 00 00 00 06 00 00 00 08 00 00 00 04 00 00
     [276] 00 00 00 00 00 05 00 00 00 08 00 00 00 01 00 00 00 01 00 00 00 01 00 00 00
     [301] 00 00 00 00 10 00 01 00 40 00 00 00 0e 00 00 00 c8 01 00 00 06 00 00 00 08
     [326] 00 00 00 02 00 00 00 00 00 00 00 05 00 00 00 08 00 00 00 01 00 00 00 01 00
     [351] 00 00 01 00 00 00 00 00 00 00 05 00 04 00 0a 00 00 00 01 00 00 00 28 00 00
     [376] 00 66 75 6e 63 74 69 6f 6e 00 00 74 79 70 65 00 00 00 00 00 00 66 69 6c 65
     [401] 00 00 00 00 00 00 77 6f 72 6b 73 70 61 63 65 00 0e 00 00 00 40 00 00 00 06
     [426] 00 00 00 08 00 00 00 04 00 00 00 00 00 00 00 05 00 00 00 08 00 00 00 01 00
     [451] 00 00 09 00 00 00 01 00 00 00 00 00 00 00 10 00 00 00 09 00 00 00 73 66 25
     [476] 30 40 28 78 29 78 00 00 00 00 00 00 00 0e 00 00 00 40 00 00 00 06 00 00 00
     [501] 08 00 00 00 04 00 00 00 00 00 00 00 05 00 00 00 08 00 00 00 01 00 00 00 09
     [526] 00 00 00 01 00 00 00 00 00 00 00 10 00 00 00 09 00 00 00 61 6e 6f 6e 79 6d
     [551] 6f 75 73 00 00 00 00 00 00 00 0e 00 00 00 30 00 00 00 06 00 00 00 08 00 00
     [576] 00 04 00 00 00 00 00 00 00 05 00 00 00 08 00 00 00 00 00 00 00 00 00 00 00
     [601] 01 00 00 00 00 00 00 00 10 00 00 00 00 00 00 00 0e 00 00 00 98 00 00 00 06
     [626] 00 00 00 08 00 00 00 11 00 00 00 00 00 00 00 01 00 00 00 00 00 00 00 01 00
     [651] 04 00 4d 43 4f 53 01 00 00 00 19 00 00 00 66 75 6e 63 74 69 6f 6e 5f 68 61
     [676] 6e 64 6c 65 5f 77 6f 72 6b 73 70 61 63 65 00 00 00 00 00 00 00 0e 00 00 00
     [701] 48 00 00 00 06 00 00 00 08 00 00 00 0d 00 00 00 00 00 00 00 05 00 00 00 08
     [726] 00 00 00 06 00 00 00 01 00 00 00 01 00 00 00 00 00 00 00 06 00 00 00 18 00
     [751] 00 00 00 00 00 dd 02 00 00 00 01 00 00 00 01 00 00 00 01 00 00 00 01 00 00
     [776] 00
    
     $y
     [,1]
     [1,] 2
    
     [[3]]
     [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14]
     [1,] 0 1 73 77 0 0 0 0 14 0 0 0 40 3
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     [1,] 0 0 6 0 0 0 8 0 0 0 2 0
     [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36] [,37] [,38]
     [1,] 0 0 0 0 0 0 5 0 0 0 8 0
     [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47] [,48] [,49] [,50]
     [1,] 0 0 1 0 0 0 1 0 0 0 1 0
     [,51] [,52] [,53] [,54] [,55] [,56] [,57] [,58] [,59] [,60] [,61] [,62]
     [1,] 0 0 0 0 0 0 5 0 4 0 5 0
     [,63] [,64] [,65] [,66] [,67] [,68] [,69] [,70] [,71] [,72] [,73] [,74]
     [1,] 0 0 1 0 0 0 5 0 0 0 77 67
     [,75] [,76] [,77] [,78] [,79] [,80] [,81] [,82] [,83] [,84] [,85] [,86]
     [1,] 79 83 0 0 0 0 14 0 0 0 224 2
     [,87] [,88] [,89] [,90] [,91] [,92] [,93] [,94] [,95] [,96] [,97] [,98]
     [1,] 0 0 6 0 0 0 8 0 0 0 17 0
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     [1,] 0 0 0 0 0 0 1 0 0 0
     [,109] [,110] [,111] [,112] [,113] [,114] [,115] [,116] [,117] [,118]
     [1,] 0 0 0 0 1 0 4 0 77 67
     [,119] [,120] [,121] [,122] [,123] [,124] [,125] [,126] [,127] [,128]
     [1,] 79 83 1 0 0 0 13 0 0 0
     [,129] [,130] [,131] [,132] [,133] [,134] [,135] [,136] [,137] [,138]
     [1,] 70 105 108 101 87 114 97 112 112 101
     [,139] [,140] [,141] [,142] [,143] [,144] [,145] [,146] [,147] [,148]
     [1,] 114 95 95 0 0 0 14 0 0 0
     [,149] [,150] [,151] [,152] [,153] [,154] [,155] [,156] [,157] [,158]
     [1,] 160 2 0 0 6 0 0 0 8 0
     [,159] [,160] [,161] [,162] [,163] [,164] [,165] [,166] [,167] [,168]
     [1,] 0 0 1 0 0 0 0 0 0 0
     [,169] [,170] [,171] [,172] [,173] [,174] [,175] [,176] [,177] [,178]
     [1,] 5 0 0 0 8 0 0 0 4 0
     [,179] [,180] [,181] [,182] [,183] [,184] [,185] [,186] [,187] [,188]
     [1,] 0 0 1 0 0 0 1 0 0 0
     [,189] [,190] [,191] [,192] [,193] [,194] [,195] [,196] [,197] [,198]
     [1,] 0 0 0 0 14 0 0 0 248 0
     [,199] [,200] [,201] [,202] [,203] [,204] [,205] [,206] [,207] [,208]
     [1,] 0 0 6 0 0 0 8 0 0 0
     [,209] [,210] [,211] [,212] [,213] [,214] [,215] [,216] [,217] [,218]
     [1,] 9 0 0 0 0 0 0 0 5 0
     [,219] [,220] [,221] [,222] [,223] [,224] [,225] [,226] [,227] [,228]
     [1,] 0 0 8 0 0 0 200 0 0 0
     [,229] [,230] [,231] [,232] [,233] [,234] [,235] [,236] [,237] [,238]
     [1,] 1 0 0 0 1 0 0 0 0 0
     [,239] [,240] [,241] [,242] [,243] [,244] [,245] [,246] [,247] [,248]
     [1,] 0 0 2 0 0 0 200 0 0 0
     [,249] [,250] [,251] [,252] [,253] [,254] [,255] [,256] [,257] [,258]
     [1,] 2 0 0 0 2 0 0 0 72 0
     [,259] [,260] [,261] [,262] [,263] [,264] [,265] [,266] [,267] [,268]
     [1,] 0 0 104 0 0 0 128 0 0 0
     [,269] [,270] [,271] [,272] [,273] [,274] [,275] [,276] [,277] [,278]
     [1,] 176 0 0 0 184 0 0 0 200 0
     [,279] [,280] [,281] [,282] [,283] [,284] [,285] [,286] [,287] [,288]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,289] [,290] [,291] [,292] [,293] [,294] [,295] [,296] [,297] [,298]
     [1,] 97 110 121 0 102 117 110 99 116 105
     [,299] [,300] [,301] [,302] [,303] [,304] [,305] [,306] [,307] [,308]
     [1,] 111 110 95 104 97 110 100 108 101 95
     [,309] [,310] [,311] [,312] [,313] [,314] [,315] [,316] [,317] [,318]
     [1,] 119 111 114 107 115 112 97 99 101 0
     [,319] [,320] [,321] [,322] [,323] [,324] [,325] [,326] [,327] [,328]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,329] [,330] [,331] [,332] [,333] [,334] [,335] [,336] [,337] [,338]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,339] [,340] [,341] [,342] [,343] [,344] [,345] [,346] [,347] [,348]
     [1,] 0 0 2 0 0 0 0 0 0 0
     [,349] [,350] [,351] [,352] [,353] [,354] [,355] [,356] [,357] [,358]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,359] [,360] [,361] [,362] [,363] [,364] [,365] [,366] [,367] [,368]
     [1,] 0 0 1 0 0 0 1 0 0 0
     [,369] [,370] [,371] [,372] [,373] [,374] [,375] [,376] [,377] [,378]
     [1,] 1 0 0 0 0 0 0 0 0 0
     [,379] [,380] [,381] [,382] [,383] [,384] [,385] [,386] [,387] [,388]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,389] [,390] [,391] [,392] [,393] [,394] [,395] [,396] [,397] [,398]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,399] [,400] [,401] [,402] [,403] [,404] [,405] [,406] [,407] [,408]
     [1,] 0 0 1 0 0 0 0 0 0 0
     [,409] [,410] [,411] [,412] [,413] [,414] [,415] [,416] [,417] [,418]
     [1,] 0 0 0 0 1 0 0 0 0 0
     [,419] [,420] [,421] [,422] [,423] [,424] [,425] [,426] [,427] [,428]
     [1,] 0 0 1 0 0 0 0 0 0 0
     [,429] [,430] [,431] [,432] [,433] [,434] [,435] [,436] [,437] [,438]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,439] [,440] [,441] [,442] [,443] [,444] [,445] [,446] [,447] [,448]
     [1,] 0 0 0 0 0 0 0 0 0 0
     [,449] [,450] [,451] [,452] [,453] [,454] [,455] [,456] [,457] [,458]
     [1,] 14 0 0 0 0 0 0 0 14 0
     [,459] [,460] [,461] [,462] [,463] [,464] [,465] [,466] [,467] [,468]
     [1,] 0 0 184 0 0 0 6 0 0 0
     [,469] [,470] [,471] [,472] [,473] [,474] [,475] [,476] [,477] [,478]
     [1,] 8 0 0 0 1 0 0 0 0 0
     [,479] [,480] [,481] [,482] [,483] [,484] [,485] [,486] [,487] [,488]
     [1,] 0 0 5 0 0 0 8 0 0 0
     [,489] [,490] [,491] [,492] [,493] [,494] [,495] [,496] [,497] [,498]
     [1,] 2 0 0 0 1 0 0 0 1 0
     [,499] [,500] [,501] [,502] [,503] [,504] [,505] [,506] [,507] [,508]
     [1,] 0 0 0 0 0 0 14 0 0 0
     [,509] [,510] [,511] [,512] [,513] [,514] [,515] [,516] [,517] [,518]
     [1,] 72 0 0 0 6 0 0 0 8 0
     [,519] [,520] [,521] [,522] [,523] [,524] [,525] [,526] [,527] [,528]
     [1,] 0 0 13 0 0 0 0 0 0 0
     [,529] [,530] [,531] [,532] [,533] [,534] [,535] [,536] [,537] [,538]
     [1,] 5 0 0 0 8 0 0 0 6 0
     [,539] [,540] [,541] [,542] [,543] [,544] [,545] [,546] [,547] [,548]
     [1,] 0 0 1 0 0 0 1 0 0 0
     [,549] [,550] [,551] [,552] [,553] [,554] [,555] [,556] [,557] [,558]
     [1,] 0 0 0 0 6 0 0 0 24 0
     [,559] [,560] [,561] [,562] [,563] [,564] [,565] [,566] [,567] [,568]
     [1,] 0 0 0 0 0 221 2 0 0 0
     [,569] [,570] [,571] [,572] [,573] [,574] [,575] [,576] [,577] [,578]
     [1,] 1 0 0 0 1 0 0 0 0 0
     [,579] [,580] [,581] [,582] [,583] [,584] [,585] [,586] [,587] [,588]
     [1,] 0 0 1 0 0 0 14 0 0 0
     [,589] [,590] [,591] [,592] [,593] [,594] [,595] [,596] [,597] [,598]
     [1,] 56 0 0 0 6 0 0 0 8 0
     [,599] [,600] [,601] [,602] [,603] [,604] [,605] [,606] [,607] [,608]
     [1,] 0 0 2 0 0 0 0 0 0 0
     [,609] [,610] [,611] [,612] [,613] [,614] [,615] [,616] [,617] [,618]
     [1,] 5 0 0 0 8 0 0 0 1 0
     [,619] [,620] [,621] [,622] [,623] [,624] [,625] [,626] [,627] [,628]
     [1,] 0 0 1 0 0 0 1 0 0 0
     [,629] [,630] [,631] [,632] [,633] [,634] [,635] [,636] [,637] [,638]
     [1,] 0 0 0 0 5 0 4 0 1 0
     [,639] [,640] [,641] [,642] [,643] [,644] [,645] [,646] [,647] [,648]
     [1,] 0 0 1 0 0 0 0 0 0 0
     [,649] [,650] [,651] [,652] [,653] [,654] [,655] [,656] [,657] [,658]
     [1,] 14 0 0 0 168 0 0 0 6 0
     [,659] [,660] [,661] [,662] [,663] [,664] [,665] [,666] [,667] [,668]
     [1,] 0 0 8 0 0 0 1 0 0 0
     [,669] [,670] [,671] [,672] [,673] [,674] [,675] [,676] [,677] [,678]
     [1,] 0 0 0 0 5 0 0 0 8 0
     [,679] [,680] [,681] [,682] [,683] [,684] [,685] [,686] [,687] [,688]
     [1,] 0 0 2 0 0 0 1 0 0 0
     [,689] [,690] [,691] [,692] [,693] [,694] [,695] [,696] [,697] [,698]
     [1,] 1 0 0 0 0 0 0 0 14 0
     [,699] [,700] [,701] [,702] [,703] [,704] [,705] [,706] [,707] [,708]
     [1,] 0 0 56 0 0 0 6 0 0 0
     [,709] [,710] [,711] [,712] [,713] [,714] [,715] [,716] [,717] [,718]
     [1,] 8 0 0 0 2 0 0 0 0 0
     [,719] [,720] [,721] [,722] [,723] [,724] [,725] [,726] [,727] [,728]
     [1,] 0 0 5 0 0 0 8 0 0 0
     [,729] [,730] [,731] [,732] [,733] [,734] [,735] [,736] [,737] [,738]
     [1,] 1 0 0 0 0 0 0 0 1 0
     [,739] [,740] [,741] [,742] [,743] [,744] [,745] [,746] [,747] [,748]
     [1,] 0 0 0 0 0 0 5 0 4 0
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     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: GLNXA64, Created on: Tue Dec 29 16:24:41 2015 \xcd\001"
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "little"
    
     Reading MAT file: datetime,arraytype=17-v5.mat
     $MCOS
     [1] 64 61 74 65 74 69 6d 65
    
     [[2]]
     [,1]
     [1,] -587202560
     [2,] 2
     [3,] 1
     [4,] 1
     [5,] 1
     [6,] 1
    
     [[3]]
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     [,469] [,470] [,471] [,472] [,473] [,474] [,475] [,476] [,477] [,478]
     [1,] 72 0 0 0 6 0 0 0 8 0
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     [,609] [,610] [,611] [,612] [,613] [,614] [,615] [,616] [,617] [,618]
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     [,709] [,710] [,711] [,712] [,713] [,714] [,715] [,716] [,717] [,718]
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     [1,] 8 0 0 0 0 0 0 0 0 0
     [,839] [,840] [,841] [,842] [,843] [,844] [,845] [,846] [,847] [,848]
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     [,859] [,860] [,861] [,862] [,863] [,864] [,865] [,866] [,867] [,868]
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     [1,] 8 0 0 0 9 2 0 0 0 0
     [,879] [,880] [,881] [,882] [,883] [,884] [,885] [,886] [,887] [,888]
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     [,889] [,890] [,891] [,892] [,893] [,894] [,895] [,896] [,897] [,898]
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     [,919] [,920] [,921] [,922] [,923] [,924] [,925] [,926] [,927] [,928]
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     [1,] 9 0 0 0 0 0 0 0 5 0
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     [1,] 0 0 8 0 0 0 1 0 0 0
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     [1,] 88 0 0 0 1 0 0 0 0 0
     [,959] [,960] [,961] [,962] [,963] [,964] [,965] [,966] [,967] [,968]
     [1,] 0 0 2 0 0 0 88 0 0 0
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     [1,] 0 1 73 77 0 0 0 0 14 0
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     [,999] [,1000] [,1001] [,1002] [,1003] [,1004] [,1005] [,1006] [,1007]
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     [1,] 0 0 0 0
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: MACI64, Created on: Tue Feb 23 21:27:34 2016 \xd3"
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "little"
    
     Reading MAT file: struct-v5.mat
     $X
     , , 1
    
     [,1]
     x numeric,6
     y list,2
     z numeric,196
    
    
     attr(,"header")
     attr(,"header")$description
     [1] "MATLAB 5.0 MAT-file, Platform: PCWIN, Created on: Tue Aug 27 01:25:36 2002 "
    
     attr(,"header")$version
     [1] "5"
    
     attr(,"header")$endian
     [1] "little"
    
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > # Assert that signed and unsigned integers are read correctly
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     > bs <- readMat(file.path(path, "unsignedByte.mat"), verbose = -120)
     Opens binary file: /home/ripley/R/Lib32/R.matlab/mat-files/unsignedByte.mat
     R.matlab options...
     R.matlab::readMat/rawBufferSize: 1e+07
     R.matlab::readMat/onDecompressError: error
     R.matlab options...done
     Trying to read MAT v5 file stream.
     Read MAT v5 header:
     $description
     [1] "MATLAB 5.0 MAT-file, Platform: SOL2, Created on: Tue Feb 15 19:32:00 2005 "
    
     $version
     [1] "5"
    
     $endian
     [1] "big"
    
     Endian: big
     Reading data element...
     Reading Tag...
     Compressed tag: FALSE
     type signed.miMATRIX sizeOf.miMATRIX what nbrOfBytes
     "miMATRIX" NA NA NA "184"
     padding compressed
     "0" "FALSE"
     Reading Tag...done
     Reading (outer) miMATRIX...
     Reading miMATRIX...
     Argument 'tag':
     List of 7
     $ type : chr "miMATRIX"
     $ signed : Named logi NA
     ..- attr(*, "names")= chr "miMATRIX"
     $ sizeOf : Named int NA
     ..- attr(*, "names")= chr "miMATRIX"
     $ what : logi NA
     $ nbrOfBytes: int 184
     $ padding : int 0
     $ compressed: logi FALSE
     Reading Tag...
     Compressed tag: FALSE
     type signed.miUINT32 sizeOf.miUINT32 nbrOfBytes padding
     "miUINT32" "FALSE" "32" "8" "0"
     compressed
     "FALSE"
     Reading Tag...done
     Reading Array Flags...
     Flags:
     global complex class
     "FALSE" "FALSE" "mxDOUBLE_CLASS"
     classSize.mxDOUBLE_CLASS nzmax
     NA "0"
     Reading Array Flags...done
     Array flags:
     List of 6
     $ logical : logi FALSE
     $ global : logi FALSE
     $ complex : logi FALSE
     $ class : chr "mxDOUBLE_CLASS"
     $ classSize: Named int NA
     ..- attr(*, "names")= chr "mxDOUBLE_CLASS"
     $ nzmax : int 0
     Reading Dimensions Array...
     Reading Tag...
     Compressed tag: FALSE
     type signed.miINT32 sizeOf.miINT32 nbrOfBytes padding
     "miINT32" "TRUE" "32" "8" "0"
     compressed
     "FALSE"
     Reading Tag...done
     Reading 2 integers each of size 4 bytes.
     Reading 0 padding bytes.
     $dim
     [1] 1 130
    
     Reading Dimensions Array...done
     Reading Array Name...
     Reading Tag...
     Compressed tag: TRUE
     type signed.miINT8 sizeOf.miINT8 nbrOfBytes padding
     "miINT8" "TRUE" "8" "1" "3"
     compressed
     "TRUE"
     Reading Tag...done
     Reading 1 characters.
     Reading 3 padding bytes.
     Name: 'A'
     Reading Array Name...done
     Array name: 'A'
     Reading Values...
     Reading Tag...
     Compressed tag: FALSE
     type signed.miUINT8 sizeOf.miUINT8 nbrOfBytes padding
     "miUINT8" "FALSE" "8" "130" "6"
     compressed
     "FALSE"
     Reading Tag...done
     Reading 130 values each of 1 bytes. In total 130 bytes.
     int [1:130] 126 127 128 129 130 131 132 133 134 135 ...
     Error in nchar(x, type = "w", allowNA = TRUE) :
     invalid multibyte string, element 35
     Calls: readMat ... eval -> str -> str.default -> maybe_truncate -> nchar.w
     Reading Values...done
     Reading miMATRIX...done
     Binary file closed.
     Execution halted
Flavor: r-patched-solaris-x86

Package R.methodsS3

Current CRAN status: NOTE: 1, OK: 13

Version: 1.8.1
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘R.oo’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Package R.oo

Current CRAN status: OK: 14

Package R.rsp

Current CRAN status: OK: 14

Package R.utils

Current CRAN status: OK: 14

Package startup

Current CRAN status: OK: 14

Package TopDom

Current CRAN status: OK: 14