CRAN Package Check Results for Maintainer ‘Julian Karch <j.d.karch at fsw.leidenuniv.nl>’

Last updated on 2021-07-29 04:57:37 CEST.

Package ERROR NOTE OK
altR2 12 2
gppm 5 9

Package altR2

Current CRAN status: NOTE: 12, OK: 2

Version: 1.0.0
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Package gppm

Current CRAN status: ERROR: 5, OK: 9

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R' [84s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > library(gppm)
     Loading required package: Rcpp
     >
     > test_check("gppm")
     make cmd is
     make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/etc/x64/Makevars.site" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file437c7505af3.dll" WIN=64 TCLBIN=64 OBJECTS="file437c7505af3.o"
    
     make would use
     make[1]: Entering directory '/d/temp/Rtmpqahck2'
     if test "zfile437c7505af3.o" != "z"; then \
     if test -e "file437c7505af3-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file437c7505af3.dll file437c7505af3-win.def file437c7505af3.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file437c7505af3.dll file437c7505af3-win.def file437c7505af3.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file437c7505af3.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file437c7505af3.dll tmp.def file437c7505af3.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file437c7505af3.dll tmp.def file437c7505af3.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/Rtmpqahck2'
     Error in compileCode(f, code, language = language, verbose = verbose) :
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file437c7505af3.o:file437c7505af3.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file437c7505af3.o:file437c7505af3.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file437c7505af3.o:file437c7505af3.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD0Ev[_ZN3tbb10interface623task_scheduler_observerD0Ev]+0x1c): undefined reference to `tbb::internal::t
     Calls: test_check ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: test_check ... withVisible -> <Anonymous> -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R'
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     g++ -shared -s -static-libgcc -o file2ca8617eff3.dll file2ca8617eff3-win.def file2ca8617eff3.o -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib/x64" -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib" -L"C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     nm file2ca8617eff3.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo g++ -shared -s -static-libgcc -o file2ca8617eff3.dll tmp.def file2ca8617eff3.o -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib/x64" -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib" -L"C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/x64" -lR ; \
     g++ -shared -s -static-libgcc -o file2ca8617eff3.dll tmp.def file2ca8617eff3.o -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib/x64" -L"/c/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/x86_64-w64-mingw32.static.posix/lib" -L"C:/msys64/home/tomas/ucrt3/svn/ucrt3/R_PACK~1/rinst/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     Error in compileCode(f, code, language = language, verbose = verbose) :
     C:\msys64\home\tomas\ucrt3\svn\ucrt3\r_packages\x86_64-w64-mingw32.static.posix\bin/ld.exe: file2ca8617eff3.o:file2ca8617eff3.cpp:(.text.startup+0x84ee): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\msys64\home\tomas\ucrt3\svn\ucrt3\r_packages\x86_64-w64-mingw32.static.posix\bin/ld.exe: file2ca8617eff3.o:file2ca8617eff3.cpp:(.text.startup+0x8d1a): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\msys64\home\tomas\ucrt3\svn\ucrt3\r_packages\x86_64-w64-mingw32.static.posix\bin/ld.exe: file2ca8617eff3.o:file2ca8617eff3.cpp:(.text.startup+0x8d40): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\msys64\home\tomas\ucrt3\svn\ucrt3\r_packages\x86_64-w64-mingw32.static.posix\bin/ld.exe: file2ca8617eff3.o:file2ca8617eff3.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1d): undefined reference to `tbb::internal::task
     Calls: test_check ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: test_check ... withVisible -> <Anonymous> -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [22s/27s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > library(gppm)
     Loading required package: Rcpp
     >
     > test_check("gppm")
Flavor: r-release-macos-arm64

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R' [86s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > library(gppm)
     Loading required package: Rcpp
     >
     > test_check("gppm")
     make cmd is
     make -f "D:/RCompile/recent/R-41~1.0/etc/x64/Makeconf" -f "D:/RCompile/recent/R-41~1.0/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-41~1.0/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file42344739e2051.dll" WIN=64 TCLBIN=64 OBJECTS="file42344739e2051.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpmC4Ykc'
     if test "zfile42344739e2051.o" != "z"; then \
     if test -e "file42344739e2051-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file42344739e2051.dll file42344739e2051-win.def file42344739e2051.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-41~1.0/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file42344739e2051.dll file42344739e2051-win.def file42344739e2051.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-41~1.0/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file42344739e2051.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file42344739e2051.dll tmp.def file42344739e2051.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-41~1.0/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file42344739e2051.dll tmp.def file42344739e2051.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-41~1.0/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpmC4Ykc'
     Error in compileCode(f, code, language = language, verbose = verbose) :
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file42344739e2051.o:file42344739e2051.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file42344739e2051.o:file42344739e2051.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file42344739e2051.o:file42344739e2051.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD0Ev[_ZN3tbb10interface623task_scheduler_observerD0Ev]+0x1c): undefined reference to `tbb:
     Calls: test_check ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: test_check ... withVisible -> <Anonymous> -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R' [105s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > library(gppm)
     Loading required package: Rcpp
     >
     > test_check("gppm")
     make cmd is
     make -f "D:/RCompile/recent/R-40~1.5/etc/x64/Makeconf" -f "D:/RCompile/recent/R-40~1.5/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-40~1.5/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file1ba012ef3e5f.dll" WIN=64 TCLBIN=64 OBJECTS="file1ba012ef3e5f.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpsJPet3'
     if test "zfile1ba012ef3e5f.o" != "z"; then \
     if test -e "file1ba012ef3e5f-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1ba012ef3e5f.dll file1ba012ef3e5f-win.def file1ba012ef3e5f.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.5/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1ba012ef3e5f.dll file1ba012ef3e5f-win.def file1ba012ef3e5f.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.5/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file1ba012ef3e5f.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1ba012ef3e5f.dll tmp.def file1ba012ef3e5f.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.5/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1ba012ef3e5f.dll tmp.def file1ba012ef3e5f.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.5/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpsJPet3'
     Error in compileCode(f, code, language = language, verbose = verbose) :
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1ba012ef3e5f.o:file1ba012ef3e5f.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1ba012ef3e5f.o:file1ba012ef3e5f.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1ba012ef3e5f.o:file1ba012ef3e5f.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD0Ev[_ZN3tbb10interface623task_scheduler_observerD0Ev]+0x1c): undefined reference to `tbb::inte
     Calls: test_check ... <Anonymous> -> <Anonymous> -> force -> cxxfunction -> compileCode
     Error in sink(type = "output") : invalid connection
     Calls: test_check ... eval -> eval -> <Anonymous> -> cxxfunctionplus -> sink
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64