CRAN Package Check Results for Maintainer ‘Robrecht Cannoodt <rcannood at gmail.com>’

Last updated on 2021-07-29 04:57:50 CEST.

Package ERROR WARN NOTE OK
anndata 14
babelwhale 14
diffusionMap 14
dyndimred 12 2
dynfeature 7 7
dyngen 1 13
dynparam 12 2
dynplot 1 13
dynutils 6 7 1
dynwrap 2 12
GillespieSSA 12 2
GillespieSSA2 1 3 10
lmds 13 1
princurve 14
qsub 13
SCORPIUS 1 13

Package anndata

Current CRAN status: OK: 14

Package babelwhale

Current CRAN status: OK: 14

Package diffusionMap

Current CRAN status: OK: 14

Package dyndimred

Current CRAN status: NOTE: 12, OK: 2

Version: 1.0.4
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Package dynfeature

Current CRAN status: NOTE: 7, OK: 7

Version: 1.0.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘magrittr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Package dyngen

Current CRAN status: NOTE: 1, OK: 13

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'SingleCellExperiment', 'SummarizedExperiment'
Flavor: r-release-macos-arm64

Package dynparam

Current CRAN status: NOTE: 12, OK: 2

Version: 1.0.2
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Package dynplot

Current CRAN status: WARN: 1, OK: 13

Version: 1.1.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘plotting-a-toy.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Warning in grid.Call.graphics(C_points, x$x, x$y, x$pch, x$size) :
     no font could be found for family "Arial"
    Quitting from lines 49-50 (plotting-a-toy.Rmd)
    Error: processing vignette 'plotting-a-toy.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘plotting-a-toy.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘plotting-a-toy.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64

Package dynutils

Current CRAN status: ERROR: 6, NOTE: 7, OK: 1

Version: 1.0.6
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.6
Check: tests
Result: ERROR
     Running 'testthat.R' [65s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > test_check("dynutils")
     Loading required package: dynutils
    
     Attaching package: 'dynutils'
    
     The following object is masked from 'package:testthat':
    
     has_names
    
     == Failed tests ================================================================
     -- Failure (test-news.R:34:3): update_news works -------------------------------
     `find_news(path = dir_loc)` did not throw an error.
    
     [ FAIL 1 | WARN 5 | SKIP 0 | PASS 554 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 1.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [515s/152s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     >
     > test_check("dynutils")
     Loading required package: dynutils
    
     Attaching package: 'dynutils'
    
     The following object is masked from 'package:testthat':
    
     has_names
    
     ❌ Unable to read hdf5 files
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-h5.R:11:3): write_h5 and read_h5 works ──────────────────────────
     Error: HDF5-API Errors:
     error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
     class: HDF5
     major: Invalid arguments to routine
     minor: Inappropriate type
    
     Backtrace:
     █
     1. └─dynutils::read_h5(file) test-h5.R:11:2
     2. └─dynutils::read_h5_(file_h5)
     3. └─hdf5r::h5attr(file_h5, "object_class")
     4. └─attr_obj$read()
     5. └─hdf5r:::H5ToR_Pre(mem_type, nelem)
     ── Error (test-h5.R:17:3): test_h5_installation works ──────────────────────────
     Error: HDF5-API Errors:
     error #000: H5T.c in H5Tget_class(): line 1876: not a datatype
     class: HDF5
     major: Invalid arguments to routine
     minor: Inappropriate type
    
     Backtrace:
     █
     1. ├─testthat::expect_true(test_h5_installation()) test-h5.R:17:2
     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
     4. └─dynutils::test_h5_installation()
     5. └─dynutils:::test_h5_installation_read(detailed, file)
     6. └─base::tryCatch(...)
     7. └─base:::tryCatchList(expr, classes, parentenv, handlers)
     8. └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9. └─value[[3L]](cond)
    
     [ FAIL 2 | WARN 0 | SKIP 0 | PASS 546 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘hdf5r’
Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 1.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [67s/30s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     7. └─base:::tryCatchList(expr, classes, parentenv, handlers)
     8. └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9. └─value[[3L]](cond)
     ── Error (test-h5.R:39:3): errors gracefully ───────────────────────────────────
     Error: there is no package called 'hdf5r'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test-h5.R:39:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 3 | WARN 2 | SKIP 0 | PASS 545 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-arm64

Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘functionality.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 93-109 (functionality.Rmd)
    Error: processing vignette 'functionality.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘functionality.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘functionality.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64

Version: 1.0.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [100s/62s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     7. └─base:::tryCatchList(expr, classes, parentenv, handlers)
     8. └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9. └─value[[3L]](cond)
     ── Error (test-h5.R:39:3): errors gracefully ───────────────────────────────────
     Error: there is no package called 'hdf5r'
     Backtrace:
     █
     1. └─base::loadNamespace(x) test-h5.R:39:2
     2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     3. └─base:::withOneRestart(expr, restarts[[1L]])
     4. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 3 | WARN 6 | SKIP 0 | PASS 545 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-x86_64

Version: 1.0.6
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [62s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > test_check("dynutils")
     Loading required package: dynutils
    
     Attaching package: 'dynutils'
    
     The following object is masked from 'package:testthat':
    
     has_names
    
     == Failed tests ================================================================
     -- Failure (test-news.R:34:3): update_news works -------------------------------
     `find_news(path = dir_loc)` did not throw an error.
    
     [ FAIL 1 | WARN 1 | SKIP 0 | PASS 554 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.0.6
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [63s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > test_check("dynutils")
     Loading required package: dynutils
    
     Attaching package: 'dynutils'
    
     The following object is masked from 'package:testthat':
    
     has_names
    
     == Failed tests ================================================================
     -- Failure (test-news.R:34:3): update_news works -------------------------------
     `find_news(path = dir_loc)` did not throw an error.
    
     [ FAIL 1 | WARN 1 | SKIP 0 | PASS 554 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.0.6
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [69s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > test_check("dynutils")
     Loading required package: dynutils
    
     Attaching package: 'dynutils'
    
     The following object is masked from 'package:testthat':
    
     has_names
    
     == Failed tests ================================================================
     -- Failure (test-news.R:34:3): update_news works -------------------------------
     `find_news(path = dir_loc)` did not throw an error.
    
     [ FAIL 1 | WARN 1 | SKIP 0 | PASS 554 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [68s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     >
     > test_check("dynutils")
     Loading required package: dynutils
    
     Attaching package: 'dynutils'
    
     The following object is masked from 'package:testthat':
    
     has_names
    
     == Failed tests ================================================================
     -- Failure (test-news.R:34:3): update_news works -------------------------------
     `find_news(path = dir_loc)` did not throw an error.
    
     [ FAIL 1 | WARN 1 | SKIP 0 | PASS 554 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Package dynwrap

Current CRAN status: NOTE: 2, OK: 12

Version: 1.2.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘hdf5r’
Flavors: r-release-macos-arm64, r-release-macos-x86_64

Package GillespieSSA

Current CRAN status: NOTE: 12, OK: 2

Version: 0.6.1
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Package GillespieSSA2

Current CRAN status: WARN: 1, NOTE: 3, OK: 10

Version: 0.2.8
Check: installed package size
Result: NOTE
     installed size is 5.3Mb
     sub-directories of 1Mb or more:
     doc 1.6Mb
     libs 3.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.2.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘an_introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 75-76 (an_introduction.Rmd)
    Error: processing vignette 'an_introduction.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘an_introduction.Rmd’
    
    --- re-building ‘converting_from_GillespieSSA.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Quitting from lines 64-85 (converting_from_GillespieSSA.Rmd)
    Error: processing vignette 'converting_from_GillespieSSA.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘converting_from_GillespieSSA.Rmd’
    
    --- re-building ‘decaying_dimer.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 52-62 (decaying_dimer.Rmd)
    Error: processing vignette 'decaying_dimer.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘decaying_dimer.Rmd’
    
    --- re-building ‘epi_chain.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 96-106 (epi_chain.Rmd)
    Error: processing vignette 'epi_chain.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘epi_chain.Rmd’
    
    --- re-building ‘linear_chain.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 57-67 (linear_chain.Rmd)
    Error: processing vignette 'linear_chain.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘linear_chain.Rmd’
    
    --- re-building ‘logistic_growth.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 56-66 (logistic_growth.Rmd)
    Error: processing vignette 'logistic_growth.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘logistic_growth.Rmd’
    
    --- re-building ‘lotka_predator_prey.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 55-65 (lotka_predator_prey.Rmd)
    Error: processing vignette 'lotka_predator_prey.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘lotka_predator_prey.Rmd’
    
    --- re-building ‘radioactive_decay.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 46-56 (radioactive_decay.Rmd)
    Error: processing vignette 'radioactive_decay.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘radioactive_decay.Rmd’
    
    --- re-building ‘rm_predator_prey.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 77-87 (rm_predator_prey.Rmd)
    Error: processing vignette 'rm_predator_prey.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘rm_predator_prey.Rmd’
    
    --- re-building ‘sir.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 51-61 (sir.Rmd)
    Error: processing vignette 'sir.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘sir.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘an_introduction.Rmd’ ‘converting_from_GillespieSSA.Rmd’
     ‘decaying_dimer.Rmd’ ‘epi_chain.Rmd’ ‘linear_chain.Rmd’
     ‘logistic_growth.Rmd’ ‘lotka_predator_prey.Rmd’
     ‘radioactive_decay.Rmd’ ‘rm_predator_prey.Rmd’ ‘sir.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64

Package lmds

Current CRAN status: NOTE: 13, OK: 1

Version: 0.1.0
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘Matrix’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Package princurve

Current CRAN status: OK: 14

Package qsub

Current CRAN status: OK: 13

Package SCORPIUS

Current CRAN status: WARN: 1, OK: 13

Version: 1.0.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘ginhoux.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 61-62 (ginhoux.Rmd)
    Error: processing vignette 'ginhoux.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘ginhoux.Rmd’
    
    --- re-building ‘simulated-data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 62-63 (simulated-data.Rmd)
    Error: processing vignette 'simulated-data.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘simulated-data.Rmd’
    
    --- re-building ‘seurat.html.asis’ using asis
    --- finished re-building ‘seurat.html.asis’
    
    SUMMARY: processing the following files failed:
     ‘ginhoux.Rmd’ ‘simulated-data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64