CRAN Package Check Results for Package sdmpredictors

Last updated on 2021-07-29 01:49:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.9 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.9 9.97 133.85 143.82 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.9 222.30 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.9 218.88 NOTE
r-devel-windows-x86_64 0.2.9 11.00 153.00 164.00 ERROR
r-devel-windows-x86_64-gcc10-UCRT 0.2.9 NOTE
r-patched-linux-x86_64 0.2.9 12.15 161.53 173.68 NOTE
r-patched-solaris-x86 0.2.9 323.80 NOTE
r-release-linux-x86_64 0.2.9 12.46 161.78 174.24 NOTE
r-release-macos-arm64 0.2.9 WARN
r-release-macos-x86_64 0.2.9 NOTE
r-release-windows-ix86+x86_64 0.2.9 25.00 142.00 167.00 ERROR
r-oldrel-macos-x86_64 0.2.9 NOTE
r-oldrel-windows-ix86+x86_64 0.2.9 19.00 144.00 163.00 ERROR

Check Details

Version: 0.2.9
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 0.2.9
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘RCurl’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.2.9
Check: tests
Result: ERROR
     Running 'testthat.R' [23s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(sdmpredictors)
     Loading required package: raster
     Loading required package: sp
     Loading required package: rgdal
     rgdal: version: 1.5-23, (SVN revision 1121)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
     Path to GDAL shared files: D:/temp/RtmpATI7U7/RLIBS_e1f048765e14/rgdal/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
     Path to PROJ shared files: D:/temp/RtmpATI7U7/RLIBS_e1f048765e14/rgdal/proj
     PROJ CDN enabled: FALSE
     Linking to sp version:1.4-5
     To mute warnings of possible GDAL/OSR exportToProj4() degradation,
     use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
     Overwritten PROJ_LIB was D:/temp/RtmpATI7U7/RLIBS_e1f048765e14/rgdal/proj
     >
     > test_check("sdmpredictors")
     [1] "d:/Rcompile/CRANpkg/local/4.2/sdmpredictors.Rcheck/tests/testthat"
     == Skipped tests ===============================================================
     * On CRAN (17)
    
     == Failed tests ================================================================
     -- Failure (test_get_sysdata.R:42:3): sysdata gets downloaded ------------------
     file.exists(outfile) is not TRUE
    
     `actual`: FALSE
     `expected`: TRUE
     Backtrace:
     x
     1. \-sdmpredictors:::gets_downloaded(outfile) test_get_sysdata.R:42:2
     2. \-testthat::expect_true(file.exists(outfile)) test_get_sysdata.R:37:4
     -- Failure (test_get_sysdata.R:45:3): sysdata gets downloaded ------------------
     file.exists(outfile) is not TRUE
    
     `actual`: FALSE
     `expected`: TRUE
     Backtrace:
     x
     1. \-sdmpredictors:::gets_downloaded(outfile) test_get_sysdata.R:45:2
     2. \-testthat::expect_true(file.exists(outfile)) test_get_sysdata.R:37:4
    
     [ FAIL 2 | WARN 44 | SKIP 17 | PASS 91 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.2.9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'quickstart.Rmd' using rmarkdown
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.5-23, (SVN revision 1121)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
    Path to GDAL shared files: D:/temp/RtmpATI7U7/RLIBS_e1f069d74d3e/rgdal/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
    Path to PROJ shared files: D:/temp/RtmpATI7U7/RLIBS_e1f069d74d3e/rgdal/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-5
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
    Overwritten PROJ_LIB was D:/temp/RtmpATI7U7/RLIBS_e1f069d74d3e/rgdal/proj
    Warning in utils::download.file(url, tmp, quiet = TRUE) :
     URL 'https://www.lifewatch.be/sdmpredictors/sysdata.rda': status was 'SSL connect error'
    trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    Content length 263 bytes
    ==================================================
    Quitting from lines 79-91 (quickstart.Rmd)
    Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
    cannot open URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    --- failed re-building 'quickstart.Rmd'
    
    SUMMARY: processing the following file failed:
     'quickstart.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.2.9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘quickstart.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.5-23, (SVN revision 1121)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.2.3, released 2021/04/27
    Path to GDAL shared files: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.1/rgdal/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
    Path to PROJ shared files: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.1/rgdal/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-5
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
    Overwritten PROJ_LIB was /Volumes/Builds/packages/big-sur-arm64/Rlib/4.1/rgdal/proj
    trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    Content type 'image/tiff' length 2518560 bytes (2.4 MB)
    ==================================================
    downloaded 2.4 MB
    
    trying URL 'http://www.lifewatch.be/sdmpredictors/BO_salinity_lonlat.tif'
    Content type 'image/tiff' length 5841760 bytes (5.6 MB)
    ==================================================
    downloaded 5.6 MB
    
    trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph.tif'
    Content type 'image/tiff' length 3201193 bytes (3.1 MB)
    ==================================================
    downloaded 3.1 MB
    
    Warning in layers_correlation(layers) :
     Following layercode(s) where not found: ['BO21_carbonphytoltmax_bdmax', 'BO21_carbonphytoltmax_bdmean', 'BO21_carbonphytoltmax_bdmin', 'BO21_carbonphytoltmax_ss', 'BO21_carbonphytoltmin_bdmax', 'BO21_carbonphytoltmin_bdmean', 'BO21_carbonphytoltmin_bdmin', 'BO21_carbonphytoltmin_ss', 'BO21_carbonphytomax_bdmax', 'BO21_carbonphytomax_bdmean', 'BO21_carbonphytomax_bdmin', 'BO21_carbonphytomax_ss', 'BO21_carbonphytomean_bdmax', 'BO21_carbonphytomean_bdmean', 'BO21_carbonphytomean_bdmin', 'BO21_carbonphytomean_ss', 'BO21_carbonphytomin_bdmax', 'BO21_carbonphytomin_bdmean', 'BO21_carbonphytomin_bdmin', 'BO21_carbonphytomin_ss', 'BO21_carbonphytorange_bdmax', 'BO21_carbonphytorange_bdmean', 'BO21_carbonphytorange_bdmin', 'BO21_carbonphytorange_ss', 'BO21_chloltmax_bdmax', 'BO21_chloltmax_bdmean', 'BO21_chloltmax_bdmin', 'BO21_chloltmax_ss', 'BO21_chloltmin_bdmax', 'BO21_chloltmin_bdmean', 'BO21_chloltmin_bdmin', 'BO21_chloltmin_ss', 'BO21_chlomax_bdmax', 'BO21_chlomax_bdmean', 'BO21_chlomax_ [... truncated]
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
     no font could be found for family "Arial"
    Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
     no font could be found for family "Arial"
    Quitting from lines 136-163 (quickstart.Rmd)
    Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘quickstart.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘quickstart.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64

Version: 0.2.9
Check: tests
Result: ERROR
     Running 'testthat.R' [22s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(sdmpredictors)
     Loading required package: raster
     Loading required package: sp
     Loading required package: rgdal
     rgdal: version: 1.5-23, (SVN revision 1121)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
     Path to GDAL shared files: D:/temp/RtmpCc1oAP/RLIBS_3e6bc699458d2/rgdal/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
     Path to PROJ shared files: D:/temp/RtmpCc1oAP/RLIBS_3e6bc699458d2/rgdal/proj
     PROJ CDN enabled: FALSE
     Linking to sp version:1.4-5
     To mute warnings of possible GDAL/OSR exportToProj4() degradation,
     use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
     Overwritten PROJ_LIB was D:/temp/RtmpCc1oAP/RLIBS_3e6bc699458d2/rgdal/proj
     >
     > test_check("sdmpredictors")
     [1] "d:/Rcompile/CRANpkg/local/4.1/sdmpredictors.Rcheck/tests/testthat"
     == Skipped tests ===============================================================
     * On CRAN (17)
    
     == Failed tests ================================================================
     -- Failure (test_get_sysdata.R:42:3): sysdata gets downloaded ------------------
     file.exists(outfile) is not TRUE
    
     `actual`: FALSE
     `expected`: TRUE
     Backtrace:
     x
     1. \-sdmpredictors:::gets_downloaded(outfile) test_get_sysdata.R:42:2
     2. \-testthat::expect_true(file.exists(outfile)) test_get_sysdata.R:37:4
     -- Failure (test_get_sysdata.R:45:3): sysdata gets downloaded ------------------
     file.exists(outfile) is not TRUE
    
     `actual`: FALSE
     `expected`: TRUE
     Backtrace:
     x
     1. \-sdmpredictors:::gets_downloaded(outfile) test_get_sysdata.R:45:2
     2. \-testthat::expect_true(file.exists(outfile)) test_get_sysdata.R:37:4
    
     [ FAIL 2 | WARN 44 | SKIP 17 | PASS 91 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'quickstart.Rmd' using rmarkdown
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.5-23, (SVN revision 1121)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
    Path to GDAL shared files: D:/temp/RtmpCc1oAP/RLIBS_3e6bc744840f4/rgdal/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
    Path to PROJ shared files: D:/temp/RtmpCc1oAP/RLIBS_3e6bc744840f4/rgdal/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-5
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
    Overwritten PROJ_LIB was D:/temp/RtmpCc1oAP/RLIBS_3e6bc744840f4/rgdal/proj
    Warning in utils::download.file(url, tmp, quiet = TRUE) :
     InternetOpenUrl failed: 'Die Serververbindung konnte nicht hergestellt werden.'
    trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    Quitting from lines 79-91 (quickstart.Rmd)
    Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
    cannot open URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    --- failed re-building 'quickstart.Rmd'
    
    SUMMARY: processing the following file failed:
     'quickstart.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.9
Check: tests
Result: ERROR
     Running 'testthat.R' [22s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(sdmpredictors)
     Loading required package: raster
     Loading required package: sp
     Loading required package: rgdal
     rgdal: version: 1.5-23, (SVN revision 1121)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
     Path to GDAL shared files: D:/temp/Rtmpqqno9E/RLIBS_1d6c42af3390a/rgdal/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
     Path to PROJ shared files: D:/temp/Rtmpqqno9E/RLIBS_1d6c42af3390a/rgdal/proj
     PROJ CDN enabled: FALSE
     Linking to sp version:1.4-5
     To mute warnings of possible GDAL/OSR exportToProj4() degradation,
     use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
     Overwritten PROJ_LIB was D:/temp/Rtmpqqno9E/RLIBS_1d6c42af3390a/rgdal/proj
     >
     > test_check("sdmpredictors")
     [1] "d:/Rcompile/CRANpkg/local/4.0/sdmpredictors.Rcheck/tests/testthat"
     == Skipped tests ===============================================================
     * On CRAN (17)
    
     == Failed tests ================================================================
     -- Failure (test_get_sysdata.R:42:3): sysdata gets downloaded ------------------
     file.exists(outfile) is not TRUE
    
     `actual`: FALSE
     `expected`: TRUE
     Backtrace:
     x
     1. \-sdmpredictors:::gets_downloaded(outfile) test_get_sysdata.R:42:2
     2. \-testthat::expect_true(file.exists(outfile)) test_get_sysdata.R:37:4
     -- Failure (test_get_sysdata.R:45:3): sysdata gets downloaded ------------------
     file.exists(outfile) is not TRUE
    
     `actual`: FALSE
     `expected`: TRUE
     Backtrace:
     x
     1. \-sdmpredictors:::gets_downloaded(outfile) test_get_sysdata.R:45:2
     2. \-testthat::expect_true(file.exists(outfile)) test_get_sysdata.R:37:4
    
     [ FAIL 2 | WARN 44 | SKIP 17 | PASS 91 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.9
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'quickstart.Rmd' using rmarkdown
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.5-23, (SVN revision 1121)
    Geospatial Data Abstraction Library extensions to R successfully loaded
    Loaded GDAL runtime: GDAL 3.2.1, released 2020/12/29
    Path to GDAL shared files: D:/temp/Rtmpqqno9E/RLIBS_1d6c4752c58d4/rgdal/gdal
    GDAL binary built with GEOS: TRUE
    Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
    Path to PROJ shared files: D:/temp/Rtmpqqno9E/RLIBS_1d6c4752c58d4/rgdal/proj
    PROJ CDN enabled: FALSE
    Linking to sp version:1.4-5
    To mute warnings of possible GDAL/OSR exportToProj4() degradation,
    use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
    Overwritten PROJ_LIB was D:/temp/Rtmpqqno9E/RLIBS_1d6c4752c58d4/rgdal/proj
    Warning in utils::download.file(url, tmp, quiet = TRUE) :
     InternetOpenUrl failed: 'Die Serververbindung konnte nicht hergestellt werden.'
    trying URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    Quitting from lines 79-91 (quickstart.Rmd)
    Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
    cannot open URL 'http://www.lifewatch.be/sdmpredictors/BO_ph_lonlat.tif'
    --- failed re-building 'quickstart.Rmd'
    
    SUMMARY: processing the following file failed:
     'quickstart.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64