LakeMetabolizer: Tools for the Analysis of Ecosystem Metabolism

A collection of tools for the calculation of freewater metabolism from in situ time series of dissolved oxygen, water temperature, and, optionally, additional environmental variables. LakeMetabolizer implements 5 different metabolism models with diverse statistical underpinnings: bookkeeping, ordinary least squares, maximum likelihood, Kalman filter, and Bayesian. Each of these 5 metabolism models can be combined with 1 of 7 models for computing the coefficient of gas exchange across the air–water interface (k). LakeMetabolizer also features a variety of supporting functions that compute conversions and implement calculations commonly applied to raw data prior to estimating metabolism (e.g., oxygen saturation and optical conversion models).

Version: 1.5.5
Depends: R (≥ 2.15.0), rLakeAnalyzer (≥ 1.4)
Imports: plyr, methods
Suggests: R2jags, testthat
Published: 2022-11-15
Author: Luke Winslow [aut], Jake Zwart ORCID iD [cre, aut], Ryan Batt [aut], Jessica Corman [aut], Hilary Dugan [aut], Paul Hanson [aut], Aline Jaimes [aut], Jordan Read [aut], Richard Woolway [aut]
Maintainer: Jake Zwart <jayzlimno at gmail.com>
BugReports: https://github.com/GLEON/LakeMetabolizer/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://www.tandfonline.com/doi/abs/10.1080/IW-6.4.883
NeedsCompilation: yes
Citation: LakeMetabolizer citation info
Materials: NEWS
CRAN checks: LakeMetabolizer results

Documentation:

Reference manual: LakeMetabolizer.pdf

Downloads:

Package source: LakeMetabolizer_1.5.5.tar.gz
Windows binaries: r-devel: LakeMetabolizer_1.5.5.zip, r-release: LakeMetabolizer_1.5.5.zip, r-oldrel: LakeMetabolizer_1.5.5.zip
macOS binaries: r-release (arm64): LakeMetabolizer_1.5.5.tgz, r-oldrel (arm64): LakeMetabolizer_1.5.5.tgz, r-release (x86_64): LakeMetabolizer_1.5.5.tgz
Old sources: LakeMetabolizer archive

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