MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Version: 1.4.0
Depends: R (≥ 3.2.0)
Imports: Rcpp, Matrix, parallel, MASS, foreach, GMMAT, CompQuadForm, data.table
LinkingTo: Rcpp, RcppArmadillo
Suggests: doMC, SeqArray, SeqVarTools, testthat
Published: 2024-04-23
Author: Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph] (Author and copyright holder of included libdeflate library), Tino Reichardt [ctb, cph] (Author and copyright holder of threading code used in the included Zstandard (zstd) library), Meta Platforms, Inc. and affiliates [cph] (Copyright holder of included Zstandard (zstd) library)
Maintainer: Han Chen <han.chen.2 at uth.tmc.edu>
License: GPL (≥ 3)
Copyright: See COPYRIGHTS for details.
MAGEE copyright details
NeedsCompilation: yes
CRAN checks: MAGEE results

Documentation:

Reference manual: MAGEE.pdf
Vignettes: MAGEE

Downloads:

Package source: MAGEE_1.4.0.tar.gz
Windows binaries: r-prerel: MAGEE_1.3.2.zip, r-release: MAGEE_1.3.2.zip, r-oldrel: MAGEE_1.3.2.zip
macOS binaries: r-prerel (arm64): MAGEE_1.4.0.tgz, r-release (arm64): MAGEE_1.4.0.tgz, r-oldrel (arm64): MAGEE_1.4.0.tgz, r-prerel (x86_64): MAGEE_1.4.0.tgz, r-release (x86_64): MAGEE_1.4.0.tgz
Old sources: MAGEE archive

Linking:

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