PACVr: Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.

Version: 0.9.4
Depends: R (≥ 3.3.0)
Imports: RCircos (≥ 1.2.0), optparse (≥ 1.6.0), genbankr (≥ 1.2.1), BiocGenerics (≥ 0.20.0), Biostrings (≥ 2.48.0), GenomicAlignments (≥ 1.18.1), GenomicRanges, IRanges
Published: 2020-11-22
Author: Michael Gruenstaeudl [aut, cre], Nils Jenke [ctb]
Maintainer: Michael Gruenstaeudl <m.gruenstaeudl at fu-berlin.de>
License: BSD 3-clause License + file LICENSE
NeedsCompilation: no
Citation: PACVr citation info
CRAN checks: PACVr results

Documentation:

Reference manual: PACVr.pdf
Vignettes: PACVr

Downloads:

Package source: PACVr_0.9.4.tar.gz
Windows binaries: r-devel: PACVr_0.9.4.zip, r-release: PACVr_0.9.4.zip, r-oldrel: PACVr_0.9.4.zip
macOS binaries: r-release (arm64): PACVr_0.9.4.tgz, r-release (x86_64): not available, r-oldrel: not available
Old sources: PACVr archive

Linking:

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